Standout Papers
Citation Impact
Citing Papers
Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles
2005 StandoutScience
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
2013 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids
2012 Science
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
2012 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Mutational landscape and significance across 12 major cancer types
2013 StandoutNature
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
2012
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
RCircos: an R package for Circos 2D track plots
2013
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
2020 Standout
De novo assembly and genotyping of variants using colored de Bruijn graphs
2012
Lethal mutations defining 112 complementation groups in a 4.5 Mb sequenced region of Caenorhabditis elegans chromosome III
1998
D³ Data-Driven Documents
2011 Standout
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2010 Standout
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
2003 StandoutNature
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
2013
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration
2017
Inactivation of Conserved C. elegans Genes Engages Pathogen- and Xenobiotic-Associated Defenses
2012 StandoutNobel
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
Computation for ChIP-seq and RNA-seq studies
2009
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
The sterol modifying enzyme LET-767 is essential for growth, reproduction and development in Caenorhabditis elegans
2003
Genome Reduction and Co-evolution between the Primary and Secondary Bacterial Symbionts of Psyllids
2012
Conditional tolerance of temperate phages via transcription-dependent CRISPR-Cas targeting
2014 Nature
Genes and Mechanisms Related to RNA Interference Regulate Expression of the Small Temporal RNAs that Control C. elegans Developmental Timing
2001 StandoutNobel
Natural RNA circles function as efficient microRNA sponges
2013 StandoutNature
Plant pathogens and integrated defence responses to infection
2001 StandoutNature
Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection
2010 Standout
In vivo genome editing using Staphylococcus aureus Cas9
2015 StandoutNature
Wnt Signaling Positions Neuromuscular Connectivity by Inhibiting Synapse Formation in C. elegans
2007
DADA2: High-resolution sample inference from Illumina amplicon data
2016 Standout
Visualizing multidimensional cancer genomics data
2013
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
2013 Standout
Advances in understanding cancer genomes through second-generation sequencing
2010
Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
2012
Fast gapped-read alignment with Bowtie 2
2012 Standout
Analysis of High-Throughput Ancient DNA Sequencing Data
2011
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
2016 StandoutNobel
Cloud-scale RNA-sequencing differential expression analysis with Myrna
2010
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
A survey of sequence alignment algorithms for next-generation sequencing
2010
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
2010
Comprehensive Integration of Single-Cell Data
2019 Standout
Foreign DNA acquisition by the I-F CRISPR–Cas system requires all components of the interference machinery
2015
De novo assembly of human genomes with massively parallel short read sequencing
2009 Standout
Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases
2014
An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma
2011
The map-based sequence of the rice genome
2005 StandoutNature
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
2013 Standout
DNA analysis of an early modern human from Tianyuan Cave, China
2013 StandoutNobel
Efficient construction of an assembly string graph using the FM-index
2010
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
2014 StandoutNobel
Structures of the CRISPR-Cmr complex reveal mode of RNA target positioning
2015 StandoutScienceNobel
Regulation of Caenorhabditis elegans neuronal polarity by heterochronic genes
2019 StandoutNobel
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
2012 Standout
OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data
2014
Cancer Genome Landscapes
2013 StandoutScience
ggbio: an R package for extending the grammar of graphics for genomic data
2012
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
2000 StandoutScience
Scaffolding pre-assembled contigs using SSPACE
2010 Standout
Identification of novel transcripts in annotated genomes using RNA-Seq
2011
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
TheCaenorhabditis elegansems class homeobox gene ceh-2 is required for M3 pharynx motoneuron function
2003 StandoutNobel
Human DNA Repair Genes
2001 StandoutScienceNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
2011
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
circlizeimplements and enhances circular visualization in R
2014 Standout
Works of Jacqueline E. Schein being referenced
Interpreting a Sequenced Genome: Toward a Cosmid Transgenic Library ofCaenorhabditis elegans
1997
Dissection of the promoter region of the inositol 1,4,5-trisphosphate receptor gene, itr-1, in C. elegans: a molecular basis for cell-specific expression of IP3R isoforms11Edited by J. Karn
2001
A map for sequence analysis of the Arabidopsis thaliana genome
1999
Circos: An information aesthetic for comparative genomics
2009 Standout
ABySS: A parallel assembler for short read sequence data
2009 Standout
De novo transcriptome assembly with ABySS
2009
New Genomic Tools for Molecular Studies of Evolutionary Change in Threespine Sticklebacks
2004