Standout Papers

Predictive functional profiling of microbial communities using 16S rRNA marker... 2010 2026 2015 2020 7.0k
  1. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences (2013)
    Morgan G. I. Langille, Jesse Zaneveld et al. Nature Biotechnology
  2. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2010)
    J. Gregory Caporaso, Christian L. Lauber et al. Proceedings of the National Academy of Sciences
  3. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms (2012)
    J. Gregory Caporaso, Christian L. Lauber et al. The ISME Journal
  4. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin (2018)
    Nicholas A. Bokulich, Benjamin D. Kaehler et al. Microbiome
  5. Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing (2012)
    Nicholas A. Bokulich, Sathish Subramanian et al. Nature Methods
  6. Soil bacterial and fungal communities across a pH gradient in an arable soil (2010)
    Johannes Rousk, Erland Bååth et al. The ISME Journal
  7. PyNAST: a flexible tool for aligning sequences to a template alignment (2009)
    J. Gregory Caporaso, Kyle Bittinger et al. Bioinformatics
  8. Current understanding of the human microbiome (2018)
    Jack A. Gilbert, Martin J. Blaser et al. Nature Medicine
  9. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys (2015)
    William A. Walters, Embriette R. Hyde et al. mSystems
  10. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes (2012)
    Noah Fierer, Jonathan W. Leff et al. Proceedings of the National Academy of Sciences
  11. Examining the global distribution of dominant archaeal populations in soil (2010)
    Scott T. Bates, Donna Berg-Lyons et al. The ISME Journal
  12. Species-level functional profiling of metagenomes and metatranscriptomes (2018)
    Eric A. Franzosa, Lauren J. McIver et al. Nature Methods
  13. Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study (2017)
    Dae‐Wook Kang, James B. Adams et al. Microbiome
  14. Moving pictures of the human microbiome (2011)
    J. Gregory Caporaso, Christian L. Lauber et al. Genome biology
  15. Defining seasonal marine microbial community dynamics (2011)
    Jack A. Gilbert, Joshua A. Steele et al. The ISME Journal
  16. Cohabiting family members share microbiota with one another and with their dogs (2013)
    Se Jin Song, Christian L. Lauber et al. eLife
  17. The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012)
    Daniel McDonald, José C. Clemente et al. GigaScience
  18. Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities (2011)
    Justin Kuczynski, Jesse Stombaugh et al. Current Protocols in Bioinformatics
  19. The under-recognized dominance of Verrucomicrobia in soil bacterial communities (2011)
    Scott T. Bates, Kathryn G. Eilers et al. Soil Biology and Biochemistry
  20. Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities (2012)
    Justin Kuczynski, Jesse Stombaugh et al. Current Protocols in Microbiology
  21. Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity (2014)
    Ashley Shade, Stuart E. Jones et al. mBio
  22. Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes (2010)
    Haiyan Chu, Noah Fierer et al. Environmental Microbiology
  23. Conducting a Microbiome Study (2014)
    Julia K. Goodrich, Sara C. Di Rienzi et al. Cell
  24. Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota (2019)
    Dae‐Wook Kang, James B. Adams et al. Scientific Reports
  25. Advancing Our Understanding of the Human Microbiome Using QIIME (2013)
    José A. Navas-Molina, Juan Manuel Peralta‐Sánchez et al. Methods in enzymology on CD-ROM/Methods in enzymology
  26. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences (2014)
    Jai Ram Rideout, Yan He et al. PeerJ
  27. Individual diet has sex-dependent effects on vertebrate gut microbiota (2014)
    Daniel I. Bolnick, Lisa K. Snowberg et al. Nature Communications
  28. Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing (2016)
    D. Lee Taylor, William A. Walters et al. Applied and Environmental Microbiology
  29. QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data (2020)
    Mehrbod Estaki, Lingjing Jiang et al. Current Protocols in Bioinformatics

Immediate Impact

1 by Nobel laureates 60 from Science/Nature 150 standout
Sub-graph 1 of 13

Citing Papers

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39 intermediate papers

Works of J. Gregory Caporaso being referenced

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
2018 Standout
Collaborative cloud-enabled tools allow rapid, reproducible biological insights
2012
and 22 more

Author Peers

Author Last Decade Papers Cites
J. Gregory Caporaso 27468 18178 4260 7614 122 55.7k
Catherine Lozupone 27665 12162 5618 4936 103 47.5k
Susan Holmes 22965 13264 4323 6499 180 50.2k
Frank Oliver Glöckner 27457 24693 2625 7483 155 55.1k
Patrick D. Schloss 22101 13734 3757 4542 196 43.0k
Jörg Peplies 21340 17046 2466 5652 39 42.9k
R. C. Edgar 40802 24913 5274 21261 46 87.5k
Jack A. Gilbert 17518 13334 2232 4855 377 37.7k
James R. Cole 15878 12770 2041 4598 88 34.9k
Philip Hugenholtz 39033 30365 4807 8422 415 75.0k
Donovan H. Parks 22687 19208 2142 5198 62 42.2k

All Works

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