Citation Impact
Citing Papers
Staging and grading of periodontitis: Framework and proposal of a new classification and case definition
2018 Standout
Morphological profiling of tubercle bacilli identifies drug pathways of action
2020
DeepCOVIDExplainer: Explainable COVID-19 Predictions Based on Chest X-ray Images
2020
A molecular classification of human mesenchymal stromal cells
2016
The Ensembl Variant Effect Predictor
2016 Standout
Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome
2022
The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
2020 Standout
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
2021 Standout
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
2010
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
AMPK activation inhibits the functions of myeloid-derived suppressor cells (MDSC): impact on cancer and aging
2019
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Methods for estimating human endogenous retrovirus activities from EST databases
2007
Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
2014
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
2014 Standout
From NASH to HCC: current concepts and future challenges
2019
A proteomic atlas of senescence-associated secretomes for aging biomarker development
2020 Standout
CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells
2016 Nature
Chronic inflammation in the etiology of disease across the life span
2019 Standout
mixOmics: An R package for ‘omics feature selection and multiple data integration
2017 Standout
The multidimensional mechanisms of long noncoding RNA function
2017 Standout
In Silico Target Prediction for Small Molecules
2018
NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence
2018
Hallmarks of aging: An expanding universe
2023 Standout
Ageing as a risk factor for neurodegenerative disease
2019 Standout
AI in health and medicine
2022 Standout
The role of macrophages in nonalcoholic fatty liver disease and nonalcoholic steatohepatitis
2018
The changing landscape of atherosclerosis
2021 StandoutNature
Hepatocellular carcinoma
2021 Standout
STEM: a tool for the analysis of short time series gene expression data
2006
Mechanisms and disease consequences of nonalcoholic fatty liver disease
2021
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs
2012
Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus
2018
Inflammation and fibrosis
2017
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
RNA-DNA Triplex Formation by Long Noncoding RNAs
2016
Machine Learning methods for Quantitative Radiomic Biomarkers
2015 Standout
Cellular senescence in ageing: from mechanisms to therapeutic opportunities
2020 Standout
Alzheimer Disease: An Update on Pathobiology and Treatment Strategies
2019 Standout
Molecular profiling of marine fauna: Integration of omics with environmental assessment of the world's oceans
2011
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents
2020 Standout
High-performance medicine: the convergence of human and artificial intelligence
2018 Standout
Epigenetic Regulation of Kupffer Cell Function in Health and Disease
2021
Non-alcoholic fatty liver disease
2021 Standout
Cellular Senescence as the Causal Nexus of Aging
2016
Drug repurposing: progress, challenges and recommendations
2018 Standout
Long noncoding RNA GAS5 inhibits progression of colorectal cancer by interacting with and triggering YAP phosphorylation and degradation and is negatively regulated by the m6A reader YTHDF3
2019
Artificial intelligence in drug development: present status and future prospects
2018 Standout
The immunobiology of hepatocellular carcinoma in humans and mice: Basic concepts and therapeutic implications
2019
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
lncRNA KHPS1 Activates a Poised Enhancer by Triplex-Dependent Recruitment of Epigenomic Regulators
2019
Plasma proteomic signature of age in healthy humans
2018
Transcription of HERV-E and HERV-E-related sequences in malignant and non-malignant human haematopoietic cells
2008 StandoutNobel
m6A Modification in Coding and Non-coding RNAs: Roles and Therapeutic Implications in Cancer
2020 Standout
Assembly of long, error-prone reads using repeat graphs
2019 Standout
DNA methylation-based biomarkers and the epigenetic clock theory of ageing
2018 Standout
Mechanisms of Fibrosis Development in Nonalcoholic Steatohepatitis
2020
A Deep Learning Approach to Antibiotic Discovery
2020
Modeling gene expression using chromatin features in various cellular contexts
2012
Macrophage M1/M2 polarization
2020 Standout
A survey of tools for variant analysis of next-generation genome sequencing data
2013
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
Macrophages in obesity and non-alcoholic fatty liver disease: Crosstalk with metabolism
2019
The prognostic landscape of genes and infiltrating immune cells across human cancers
2015 Standout
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
COVID-Net: a tailored deep convolutional neural network design for detection of COVID-19 cases from chest X-ray images
2020 Standout
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
2016 Standout
Inflammation in obesity, diabetes, and related disorders
2022 Standout
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Identification of copy number variants in whole-genome data using Reference Coverage Profiles
2015 StandoutNobel
AASLD Practice Guidance on the clinical assessment and management of nonalcoholic fatty liver disease
2023 Standout
DNA methylation GrimAge strongly predicts lifespan and healthspan
2019 Standout
High CYP2E1 activity aggravates hepatofibrosis by limiting macrophage polarization towards the M2 phenotype
2019
Integrative methods for analyzing big data in precision medicine
2015
Detection of mutant KRAS and TP53 DNA in circulating exosomes from healthy individuals and patients with pancreatic cancer
2017
Correlative imaging of ionic transport and electronic structure in nano Li0.5FePO4 electrodes
2019 StandoutNobel
Noncoding RNAs in Vascular Diseases
2020
Mixtures of common t-factor analyzers for clustering high-dimensional microarray data
2011
Gingival Tissue Transcriptomes Identify Distinct Periodontitis Phenotypes
2014
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads
2014
The biology , function , and biomedical applications of exosomes
2020 StandoutScience
A practical guide for DNase-seq data analysis: from data management to common applications
2018
Rapamycin retards epigenetic ageing of keratinocytes independently of its effects on replicative senescence, proliferation and differentiation
2019
An epigenetic biomarker of aging for lifespan and healthspan
2018 Standout
Targeted gene knock-in by homology-directed genome editing using Cas9 ribonucleoprotein and AAV donor delivery
2017 StandoutNobel
A review of microarray datasets and applied feature selection methods
2014
A Fluorogenic Trehalose Probe for Tracking Phagocytosed Mycobacterium tuberculosis
2020 StandoutNobel
Finite Mixture Models
2000 Standout
Works of Ivan G. Costa being referenced
CLEVER: clique-enumerating variant finder
2012
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis
2017
Hematopoietic Stem and Progenitor Cells Acquire Distinct DNA-Hypermethylation During in vitro Culture
2013
A multiple kernel learning algorithm for drug-target interaction prediction
2016
Clustering cancer gene expression data: a comparative study
2008
The Graphical Query Language: a tool for analysis of gene expression time-courses
2005
Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models
2011
The lncRNA HOTAIR impacts on mesenchymal stem cellsviatriple helix formation
2016
Discovering motifs that induce sequencing errors
2013
Detection of Hot-Spot Mutations in Circulating Cell-Free DNA From Patients With Intraductal Papillary Mucinous Neoplasms of the Pancreas
2016
Analyzing Gene Expression Time-Courses
2005
Nrf2 Is a Central Regulator of Metabolic Reprogramming of Myeloid-Derived Suppressor Cells in Steady State and Sepsis
2018
Replicative senescence is associated with nuclear reorganization and with DNA methylation at specific transcription factor binding sites
2015
Analysis of computational footprinting methods for DNase sequencing experiments
2016
Epigenetic Classification of Human Mesenchymal Stromal Cells
2016
Differential peak calling of ChIP-seq signals with replicates with THOR
2016
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
2019
Analysis of complexity indices for classification problems: Cancer gene expression data
2011
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures
2016
Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data
2019
On the selection of appropriate distances for gene expression data clustering
2014
Detection and interpretation of metabolite–transcript coresponses using combined profiling data
2011
Detection of RNA–DNA binding sites in long noncoding RNAs
2019
Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications
2014
Deep learning-based clustering approaches for bioinformatics
2019
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy
2016