Citation Impact
Citing Papers
Nature of the protein universe
2009 StandoutNobel
Endosomal TLR signaling is required for anti-nucleic acid and rheumatoid factor autoantibodies in lupus
2009 StandoutNobel
Species-Specific Recognition of Single-Stranded RNA via Toll-like Receptor 7 and 8
2004 StandoutScience
Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
2009 StandoutScience
LDL receptor and its family members serve as the cellular receptors for vesicular stomatitis virus
2013
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences
2004
Systemic Targeting of CpG-ODN to the Tumor Microenvironment with Anti–neu-CpG Hybrid Molecule and T Regulatory Cell Depletion Induces Memory Responses in BALB-neuT Tolerant Mice
2008 StandoutNobel
A Toll-like receptor recognizes bacterial DNA
2000 StandoutNature
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory
2002 StandoutNobel
Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals
2008
Activation of Autoreactive B Cells by CpG dsDNA
2003
SignalP 5.0 improves signal peptide predictions using deep neural networks
2019 Standout
The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
2010 Standout
An Atomic Environment Potential for use in Protein Structure Prediction
2005 StandoutNobel
Inference of Macromolecular Assemblies from Crystalline State
2007 Standout
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
mRNA-based therapeutics — developing a new class of drugs
2014 StandoutNobel
Lateral gene transfer and the nature of bacterial innovation
2000 StandoutNature
TLR-dependent and TLR-independent pathways of type I interferon induction in systemic autoimmunity
2007 StandoutNobel
Dicer-TRBP Complex Formation Ensures Accurate Mammalian MicroRNA Biogenesis
2014 StandoutNobel
The Pfam Protein Families Database
2002 Standout
The MEME Suite
2015 Standout
Metagenomic signatures of 86 microbial and viral metagenomes
2009
The dynamic disulphide relay of quiescin sulphydryl oxidase
2012 StandoutNatureNobel
Pattern Recognition Receptors and Inflammation
2010 Standout
In vitro DNA-binding profile of transcription factors: methods and new insights
2011
Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome
2003
PHAST: A Fast Phage Search Tool
2011 Standout
Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
2007
Bacteriophage T4 gene 59 helicase assembly protein binds replication fork DNA. The 1.45 Å resolution crystal structure reveals a novel α-helical two-domain fold 1 1Edited by P. E. Wright
2000
Massively parallel determination and modeling of endonuclease substrate specificity
2014 StandoutNobel
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Molecular Mechanisms of Long Noncoding RNAs
2011 Standout
Initial sequence of the chimpanzee genome and comparison with the human genome
2005 StandoutNature
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses
2004 Standout
Proteomics enhances evolutionary and functional analysis of reproductive proteins
2009
Improved Prediction of Signal Peptides: SignalP 3.0
2004 Standout
Capturing Whole-Genome Characteristics in Short Sequences Using a Naïve Bayesian Classifier
2001
Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential
2015 Standout
The role of CpG motifs in innate immunity
2000
American Cancer Society guidelines on nutrition and physical activity for cancer prevention
2012
Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
2007
The Human Microbiome Project
2007 StandoutNature
KoBaMIN: a knowledge-based minimization web server for protein structure refinement
2012 StandoutNobel
The Unc93b1 mutation 3d disrupts exogenous antigen presentation and signaling via Toll-like receptors 3, 7 and 9
2006 StandoutNobel
Motif-based analysis of large nucleotide data sets using MEME-ChIP
2014
Machine learning approaches for the prediction of signal peptides and other protein sorting signals
1999
Origins and diversity of eukaryotic CO2-concentrating mechanisms: lessons for the future
2013
Hepatic Stellate Cells: Protean, Multifunctional, and Enigmatic Cells of the Liver
2008 Standout
Inferences, questions and possibilities in Toll-like receptor signalling
2004 StandoutNatureNobel
Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation
2002 StandoutNobel
Pathogen Recognition and Innate Immunity
2006 Standout
Community structure and metabolism through reconstruction of microbial genomes from the environment
2004 StandoutNature
Identification of CpG oligonucleotide sequences with high induction of IFN-α/β in plasmacytoid dendritic cells
2001
Toll-like receptors and innate immunity
2001 Standout
Vernalization: Winter and the Timing of Flowering in Plants
2009
Toll-Like Receptors
2003 Standout
A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites
1997
Improved asymmetry prediction for short interfering RNA s
2013
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
High-performance signal peptide prediction based on sequence alignment techniques
2008
Dynamics of Carbon-Concentrating Mechanism Induction and Protein Relocalization during the Dark-to-Light Transition in Synchronized Chlamydomonas reinhardtii
2014
COMPARATIVE DNA ANALYSIS ACROSS DIVERSE GENOMES
1998
DNA and a CpG Oligonucleotide Derived fromBabesia bovisAre Mitogenic for Bovine B Cells
1998
TYPE I INTERFERONS (α/β) IN IMMUNITY AND AUTOIMMUNITY
2004 StandoutNobel
Quality control and preprocessing of metagenomic datasets
2011 Standout
Roles of mutation and recombination in the evolution of protein thermodynamics
2002 StandoutNobel
CpG Motifs in Bacterial DNA and Their Immune Effects
2002 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Gene-Targeted Mice Lacking the Trex1 (DNase III) 3′→5′ DNA Exonuclease Develop Inflammatory Myocarditis
2004 StandoutNobel
Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors
2015
Application of tetranucleotide frequencies for the assignment of genomic fragments
2004
Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline
2010 StandoutNobel
Human secretory signal peptide description by hidden Markov model and generation of a strong artificial signal peptide for secreted protein expression
2002
Global cancer statistics, 2012
2015 Standout
Innate Immune Recognition
2002 Standout
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
Empirical statistical estimates for sequence similarity searches
1998
Protein Folding Theory: From Lattice to All-Atom Models
2001
Works of István Ladunga being referenced
Computational Biology of Transcription Factor Binding
2010
FASTA-SWAP and FASTA-PAT: Pattern Database Searches Using Combinations of Aligned Amino Acids, and a Novel Scoring Theory
1996
More complete gene silencing by fewer siRNAs: transparent optimized design and biophysical signature
2006
Transcriptional profiling of the sperm storage organs of Drosophila melanogaster
2009
Amino acid substitutions preserve protein folding by conserving steric and hydrophobicity properties
1997
Phylogenetic continuum indicates “Galaxies” in the protein universe: Preliminary results on the natural group structures of proteins
1992
Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
2013
PHYSEAN: PHYsical SEquence ANalysis for the identification of protein domains on the basis of physical and chemical properties of amino acids
1999
Improving signal peptide prediction accuracy by simulated neural network
1991
Transcriptome-Wide Changes in Chlamydomonas reinhardtii Gene Expression Regulated by Carbon Dioxide and the CO2-Concentrating Mechanism Regulator CIA5/CCM1
2012
Comparisons of eukaryotic genomic sequences.
1994
Heterogeneity of genomes: measures and values.
1994
Defining a relationship between dietary fatty acids and the cytochrome P450 system in a mouse model of fatty liver disease
2010
The Highly SimilarArabidopsisHomologs of Trithorax ATX1 and ATX2 Encode Proteins with Divergent Biochemical Functions
2008
RNAi screening reveals requirement for host cell secretory pathway in infection by diverse families of negative-strand RNA viruses
2011
Activation of the Carbon Concentrating Mechanism by CO2 Deprivation Coincides with Massive Transcriptional Restructuring in Chlamydomonas reinhardtii
2012