Standout Papers
Citation Impact
Citing Papers
NCBI Taxonomy: a comprehensive update on curation, resources and tools
2020 Standout
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
2013 Standout
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
2013 Standout
Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection
2019
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
2018 Standout
Microbial diversity drives multifunctionality in terrestrial ecosystems
2016 Standout
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Plant biostimulants: Definition, concept, main categories and regulation
2015 Standout
Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality
2020 Standout
Improved metagenomic analysis with Kraken 2
2019 Standout
The gut mycobiome of the Human Microbiome Project healthy cohort
2017 Standout
ColabFold: making protein folding accessible to all
2022 Standout
Nano-enabled pesticides for sustainable agriculture and global food security
2022 Standout
Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests
2012
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages
2009
Bacterial Community Shift in Treated Periodontitis Patients Revealed by Ion Torrent 16S rRNA Gene Amplicon Sequencing
2012
Towards global patterns in the diversity and community structure of ectomycorrhizal fungi
2012
Going back to the roots: the microbial ecology of the rhizosphere
2013 Standout
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
2010 Standout
Blocking human contaminant DNA during PCR allows amplification of rare mammal species from sedimentary ancient DNA
2011
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
The Fungi: 1, 2, 3 … 5.1 million species?
2011
Identification of fungi in shotgun metagenomics datasets
2018
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
2009
Potential link between plant and fungal distributions in a dipterocarp rainforest: community and phylogenetic structure of tropical ectomycorrhizal fungi across a plant and soil ecotone
2009
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
2013 Standout
Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing
2014
The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
2010 Standout
The skin microbiome
2011 Standout
ABGD, Automatic Barcode Gap Discovery for primary species delimitation
2011 Standout
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
2013 Standout
Rooting theories of plant community ecology in microbial interactions
2010
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
2011
The rhizosphere microbiome and plant health
2012 Standout
Long livestock farming history and human landscape shaping revealed by lake sediment DNA
2014 Standout
Redefining the Human Oral Mycobiome with Improved Practices in Amplicon-based Taxonomy: Discovery of Malassezia as a Prominent Commensal
2014
UPARSE: highly accurate OTU sequences from microbial amplicon reads
2013 Standout
Soil microbiomes and climate change
2019 Standout
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Protein structure predictions to atomic accuracy with AlphaFold
2022 StandoutNobel
Pfam: The protein families database in 2021
2020 Standout
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
2012 Standout
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
2015 Standout
Fine root foraging strategies in N orway spruce forests across a E uropean climate gradient
2011
Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand
2010
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
2015
Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground
2013
Mycorrhizal networks: Mechanisms, ecology and modelling
2012
Strong coupling of plant and fungal community structure across western Amazonian rainforests
2013
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Barcoding of Plants and Fungi
2009 Science
Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
2013
Early infancy microbial and metabolic alterations affect risk of childhood asthma
2015 Standout
Assessment of Microbial Communities by Graph Partitioning in a Study of Soil Fungi in Two Alpine Meadows
2009
The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors
2009
Long-Term Effects of Copper Nanopesticides on Soil and Sediment Community Diversity in Two Outdoor Mesocosm Experiments
2020
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
MGnify: the microbiome analysis resource in 2020
2019
Community assembly of ectomycorrhizal fungi along a subtropical secondary forest succession
2014
Improving taxonomic accuracy for fungi in public sequence databases: applying ‘one name one species’ in well-defined genera with Trichoderma/Hypocrea as a test case
2017
Fungal community analysis by high‐throughput sequencing of amplified markers – a user's guide
2013
Stochastic distribution of small soil eukaryotes resulting from high dispersal and drift in a local environment
2015
Redefining fine roots improves understanding of below‐ground contributions to terrestrial biosphere processes
2015 Standout
Fungal Community Shifts in Structure and Function across a Boreal Forest Fire Chronosequence
2015
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
Soil bacterial and fungal communities across a pH gradient in an arable soil
2010 Standout
Mycorrhizal ecology and evolution: the past, the present, and the future
2015 Standout
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
2016
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
2015 Standout
Network perspectives of ectomycorrhizal associations
2013
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
2011
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Biomass for a sustainable bioeconomy: An overview of world biomass production and utilization
2021 Standout
Works of Irja Saar being referenced
Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon‐specific primers
2008
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
2010
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Ectomycorrhizas of Coltricia and Coltriciella (Hymenochaetales, Basidiomycota) on Caesalpiniaceae, Dipterocarpaceae and Myrtaceae in Seychelles
2007
PlutoF—a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences
2010