Citation Impact
Citing Papers
Predicting enhancer‐promoter interaction from genomic sequence with deep neural networks
2019
Analysis of microRNA and Gene Expression Profiles in Multiple Sclerosis: Integrating Interaction Data to Uncover Regulatory Mechanisms
2016
Virtual ChIP-seq: predicting transcription factor binding by learning from the transcriptome
2022
The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
2020 Standout
Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data
2014
Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation
2015 StandoutNobel
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
2019
Krüppel-like factor 3 (KLF3) suppresses NF-κB–driven inflammation in mice
2020
Macrophages in immunoregulation and therapeutics
2023 Standout
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Long Noncoding RNAs in Cancer Pathways
2016 Standout
Detecting genome-wide directional effects of transcription factor binding on polygenic disease risk
2018
The Human Transcription Factors
2018 Standout
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
2015 Standout
Global transcriptional activity dynamics reveal functional enhancer RNAs
2018
Translational control of immune responses: from transcripts to translatomes
2014
Confirmation of five novel susceptibility loci for Systemic Lupus Erythematosus (SLE) and integrated network analysis of 82 SLE susceptibility loci
2017
Biological Functions of Autophagy Genes: A Disease Perspective
2019 Standout
Prediction of enhancer-promoter interactions via natural language processing
2018
The Genetics of Transcription Factor DNA Binding Variation
2016
Towards a comprehensive catalogue of validated and target-linked human enhancers
2020
Promoter Analysis Reveals Globally Differential Regulation of Human Long Non-Coding RNA and Protein-Coding Genes
2014
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
2018
Interpreting neural networks for biological sequences by learning stochastic masks
2022 StandoutNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
TFClass: a classification of human transcription factors and their rodent orthologs
2014
Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier
2019 StandoutNobel
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Works of Ilya E. Vorontsov being referenced
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
2015
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
2017
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
2012
In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response
2013
FROM BINDING MOTIFS IN CHIP-SEQ DATA TO IMPROVED MODELS OF TRANSCRIPTION FACTOR BINDING SITES
2013