Citation Impact
Citing Papers
DNA capture by a CRISPR-Cas9–guided adenine base editor
2020 StandoutScienceNobel
LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales
2021 Standout
Regulation of microRNA function in animals
2018 Standout
Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy
2016 StandoutNobel
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing
2019
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
Coarse-grained simulation of DNA using LAMMPS
2018
Key role of the REC lobe during CRISPR–Cas9 activation by ‘sensing’, ‘regulating’, and ‘locking’ the catalytic HNH domain
2018 StandoutNobel
Intermediate states during mRNA–tRNA translocation
2012 StandoutNobel
Impact of 2′‐hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all‐atom additive force field for RNA
2011
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics
2019 StandoutNobel
Structural snapshots of TRPV1 reveal mechanism of polymodal functionality
2021 StandoutNobel
Recent developments and applications of the CHARMM force fields
2011
A computational approach for predicting off-target toxicity of antiviral ribonucleoside analogues to mitochondrial RNA polymerase
2018 StandoutNobel
Accurate prediction of protein–nucleic acid complexes using RoseTTAFoldNA
2023 StandoutNobel
Structure and mechanical properties of the ribosomal L1 stalk three-way junction
2012
Modeling nucleic acids
2012 StandoutNobel
Structure-based modeling of protein: DNA specificity
2014
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
2015 Standout
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
2015 Standout
Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing
2012 Standout
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald
2013 Standout
Ribonuclease III mechanisms of double‐stranded RNA cleavage
2013
Ion-dependent protein–surface interactions from intrinsic solvent response
2021 StandoutNobel
A protocol for preparing explicitly solvated systems for stable molecular dynamics simulations
2020
The Chemistry of Reactive Oxygen Species (ROS) Revisited: Outlining Their Role in Biological Macromolecules (DNA, Lipids and Proteins) and Induced Pathologies
2021 Standout
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview
2018
A Robust and Accurate Tight-Binding Quantum Chemical Method for Structures, Vibrational Frequencies, and Noncovalent Interactions of Large Molecular Systems Parametrized for All spd-Block Elements (Z = 1–86)
2017 Standout
CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
2013 Standout
Physicochemical Foundations of Life that Direct Evolution: Chance and Natural Selection are not Evolutionary Driving Forces
2020
New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions
2018
Computational design of mechanically coupled axle-rotor protein assemblies
2022 StandoutScienceNobel
RNA Scanning of a Molecular Machine with a Built-in Ruler
2016 StandoutNobel
Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters
2013
Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles
2011
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
2017 StandoutNobel
Substrate Recognition and Specificity of Double-Stranded RNA Binding Proteins
2014
An overview of the Amber biomolecular simulation package
2012 Standout
Frontiers in Molecular Dynamics Simulations of DNA
2011
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
2013 Standout
Computer simulations explain mutation-induced effects on the DNA editing by adenine base editors
2020
Works of Ignacio Faustino being referenced
Toward a Consensus View of Duplex RNA Flexibility
2010
Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA
2014
Exploring polymorphisms in B-DNA helical conformations
2012
Coupled binding mechanism of three sodium ions and aspartate in the glutamate transporter homologue GltTk
2016
Martini Coarse-Grained Force Field: Extension to RNA
2017
Parmbsc1: a refined force field for DNA simulations
2015