Citation Impact
Citing Papers
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
2009 StandoutScience
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
2009 Standout
Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors
2009 StandoutScience
Loss of cryptochrome reduces cancer risk in p53 mutant mice
2009 StandoutNobel
A Bacterial Effector Acts as a Plant Transcription Factor and Induces a Cell Size Regulator
2007 Science
Oncogenic activation of the Notch1 gene by deletion of its promoter in Ikaros-deficient T-ALL
2010 StandoutNobel
MicroRNA genes are transcribed by RNA polymerase II
2004 Standout
Radiation-induced deletions in the 5' end region of Notch1 lead to the formation of truncated proteins and are involved in the development of mouse thymic lymphomas
2003
Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides
2006
Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements
2012
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
2011 Standout
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
The General Transcription Machinery and General Cofactors
2006
Targeting hypoxia in cancer therapy
2011 Standout
CpG islands and the regulation of transcription
2011 Standout
The role of enhancers as centres for general transcription factor recruitment
2005
Mis-translation of a Computationally Designed Protein Yields an Exceptionally Stable Homodimer: Implications for Protein Engineering and Evolution
2006 StandoutNobel
DBTSS: database of transcription start sites, progress report 2008
2007
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
Triplex-forming oligonucleotide target sequences in the human genome
2004
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs
2001
Statistical analysis of over-represented words in human promoter sequences
2004
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
2008
Identification of a ubiquitously active promoter of the murine activation-induced cytidine deaminase (AICDA) gene
2005
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
2014 Standout
Clk post-transcriptional control denoises circadian transcription both temporally and spatially
2015 StandoutNobel
Mammalian RNA polymerase II core promoters: insights from genome-wide studies
2007
Large-scale identification and characterization of human genes that activate NF-κB and MAPK signaling pathways
2003
The mechanism of eukaryotic translation initiation and principles of its regulation
2010 Standout
Plant immunity: towards an integrated view of plant–pathogen interactions
2010 Standout
Long non-coding RNAs: new players in cell differentiation and development
2013 Standout
Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus
2005 StandoutNature
A Ribosomopathy Reveals Decoding Defective Ribosomes Driving Human Dysmorphism
2017 StandoutNobel
Translation of branched-chain aminotransferase-1 transcripts is impaired in cells haploinsufficient for ribosomal protein genes
2014
IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction
2005 Standout
Evolution of alternative and constitutive regions of mammalian 5'UTRs
2009
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
Structural and mechanistic insights into hepatitis C viral translation initiation
2006 StandoutNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Systems Biology of Mammalian Circadian Clocks
2007
Computational analysis of core promoters in the Drosophila genome
2002
Pushing the limits of the scanning mechanism for initiation of translation
2002
Regulation of translation via mRNA structure in prokaryotes and eukaryotes
2005
The Role of Chromatin during Transcription
2007 Standout
Structural and functional diversity of viral IRESes
2009
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Use of Transcriptome Data to Unravel the Fine Structure of Genes Involved in Sepsis
2003 StandoutNobel
Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
2005 StandoutNobel
B cell–specific and stimulation-responsive enhancers derepress Aicda by overcoming the effects of silencers
2009 StandoutNobel
VISA Is an Adapter Protein Required for Virus-Triggered IFN-β Signaling
2005 Standout
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks
2008
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
2009 Standout
Identification and Characterization of MAVS, a Mitochondrial Antiviral Signaling Protein that Activates NF-κB and IRF3
2005 Standout
Widespread transcription at neuronal activity-regulated enhancers
2010 StandoutNature
Regulation of gene expression by alternative untranslated regions
2006
Upstream open reading frames: Molecular switches in (patho)physiology
2010
In Vivo Analysis of Aicda Gene Regulation: A Critical Balance between Upstream Enhancers and Intronic Silencers Governs Appropriate Expression
2013 StandoutNobel
AceView: a comprehensive cDNA-supported gene and transcripts annotation
2006
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Sp1 site is crucial for the mouse claudin‐19 gene expression in the kidney cells
2004
A TALE nuclease architecture for efficient genome editing
2010 Standout
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
2007 Standout
Close spacing of AUG initiation codons confers dicistronic character on a eukaryotic mRNA
2006
The RNA polymerase II core promoter: a key component in the regulation of gene expression
2002
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands
2009
Structural insights on the translation initiation complex: ghosts of a universal initiation complex
2006 StandoutNobel
Genome Regulation by Long Noncoding RNAs
2012 Standout
“Translating” Tumor Hypoxia: Unfolded Protein Response (UPR)–Dependent and UPR-Independent Pathways
2006
Internal Initiation Stimulates Production of p8 Minicore, a Member of a Newly Discovered Family of Hepatitis C Virus Core Protein Isoforms
2009 StandoutNobel
Unc93B1 biases Toll-like receptor responses to nucleic acid in dendritic cells toward DNA- but against RNA-sensing
2009 StandoutNobel
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
2003
EUKARYOTIC CYTOSINE METHYLTRANSFERASES
2005 Standout
Before It Gets Started: Regulating Translation at the 5′ UTR
2012
THE MAMMALIAN UNFOLDED PROTEIN RESPONSE
2005 Standout
Interferon-Stimulated Genes: A Complex Web of Host Defenses
2014 StandoutNobel
When one is better than two: RNA with dual functions
2010
Cloning of the Human Claudin-2 5′-Flanking Region Revealed a TATA-less Promoter with Conserved Binding Sites in Mouse and Human for Caudal-related Homeodomain Proteins and Hepatocyte Nuclear Factor-1α
2002
Cloning and sequencing of TT virus genotype 6 and expression of antigenic open reading frame 2 proteins
2002
Response of Hepatitis C Virus to Long-Term Passage in the Presence of Alpha Interferon: Multiple Mutations and a Common Phenotype
2013 StandoutNobel
Systems Biology of Mammalian Circadian Clocks
2010
Ribosomal tethering and clustering as mechanisms for translation initiation
2006 Nobel
Claudins and the Modulation of Tight Junction Permeability
2013 Standout
Control of eukaryotic protein synthesis by upstream open reading frames in the 5′-untranslated region of an mRNA
2002
The RNA Polymerase II Core Promoter
2003
Isolation of Multiple TT Virus Genotypes from Spleen Biopsy Tissue from a Hodgkin's Disease Patient: Genome Reorganization and Diversity in the Hypervariable Region
2004 StandoutNobel
Works of Hiroko Hata being referenced
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
2001
Statistical Analysis of the 5′ Untranslated Region of Human mRNA Using “Oligo-Capped” cDNA Libraries
2000
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
2004
Diverse transcriptional initiation revealed by fine, large‐scale mapping of mRNA start sites
2001
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
2001
Modeling and estimation of dynamic EGFR pathway by data assimilation approach using time series proteomic data.
2006