Citation Impact
Citing Papers
The Spatial Organization of the Human Genome
2013
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Hypoxia Drives Breast Tumor Malignancy through a TET–TNFα–p38–MAPK Signaling Axis
2015
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
Transcriptional Regulation by Nrf2
2017 Standout
HiFive: a tool suite for easy and efficient HiC and 5C data analysis
2015
A survey of best practices for RNA-seq data analysis
2016 Standout
High-resolution TADs reveal DNA sequences underlying genome organization in flies
2018
Structural Characterization by Cross-linking Reveals the Detailed Architecture of a Coatomer-related Heptameric Module from the Nuclear Pore Complex
2014
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
2016 Standout
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m 6 A-demethylation of NANOG mRNA
2016 StandoutNobel
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
2012
dCas9 fusion to computer-designed PRC2 inhibitor reveals functional TATA box in distal promoter region
2022 StandoutNobel
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Uncertainty in integrative structural modeling
2014
The molecular hallmarks of epigenetic control
2016 Standout
Transcriptional architecture of the mammalian circadian clock
2016 Standout
Paramagnetic labelling of proteins and oligonucleotides for NMR
2009
Long-Range Chromatin Interactions
2015
The statistical-mechanics of chromosome conformation capture
2013
Single-cell chromatin accessibility reveals principles of regulatory variation
2015 Nature
The selection and function of cell type-specific enhancers
2015
High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
2013
Three-dimensional genome architecture: players and mechanisms
2015
Polypeptide and peptide toxins, magnifying lenses for binding sites in nicotinic acetylcholine receptors
2009
Atomistic mechanism for the activation and desensitization of an AMPA-subtype glutamate receptor
2011
The ClusPro web server for protein–protein docking
2017 Standout
Chromatin-Driven Behavior of Topologically Associating Domains
2014
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Nicotinic receptors: allosteric transitions and therapeutic targets in the nervous system
2009
Normalization of a chromosomal contact map
2012
Accurate identification of centromere locations in yeast genomes using Hi-C
2015
A Bivalent Tarantula Toxin Activates the Capsaicin Receptor, TRPV1, by Targeting the Outer Pore Domain
2010 StandoutNobel
Single-cell lysis for visual analysis by electron microscopy
2013
A collaborative framework for 3D alignment and classification of heterogeneous subvolumes in cryo-electron tomography
2012 Standout
Receptor-targeting mechanisms of pain-causing toxins: How ow?
2012 StandoutNobel
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
2016
Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule
2015 StandoutNobel
Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist
2012 StandoutNatureNobel
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
Mapping Human Epigenomes
2013
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
2013
Principles for Integrative Structural Biology Studies
2019
The 3D genome: From fundamental principles to disease and cancer
2018
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Methods for Molecular Modelling of Protein Complexes
2021
The Hierarchy of the 3D Genome
2013
Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM
2020 StandoutNobel
Hypoxia-inducible factors promote breast cancer stem cell specification and maintenance in response to hypoxia or cytotoxic chemotherapy
2018 StandoutNobel
Dictionary learning for integrative, multimodal and scalable single-cell analysis
2023 Standout
DeepC: predicting 3D genome folding using megabase-scale transfer learning
2020
The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells
2013
Synthesis of Selective Agonists for the α7 Nicotinic Acetylcholine Receptor with In Situ Click-Chemistry on Acetylcholine-Binding Protein Templates
2012 StandoutNobel
The 3D Genome as Moderator of Chromosomal Communication
2016
Crystal Structures of a Cysteine-modified Mutant in Loop D of Acetylcholine-binding Protein
2010
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching
2012
Click-EM for imaging metabolically tagged nonprotein biomolecules
2016 StandoutNobel
Down syndrome
2020 Standout
Protein Structure Determination from Pseudocontact Shifts Using ROSETTA
2012 StandoutNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
2016 StandoutNobel
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
2012
Enhancer Chromatin and 3D Genome Architecture Changes from Naive to Primed Human Embryonic Stem Cell States
2019
High-quality genome (re)assembly using chromosomal contact data
2014
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
2012
Genome Architecture: Domain Organization of Interphase Chromosomes
2013
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
2013 Nature
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Elucidation of AMPA receptor–stargazin complexes by cryo–electron microscopy
2016 StandoutScienceNobel
Transcription Factories: Genome Organization and Gene Regulation
2013
Interaction-site prediction for protein complexes: a critical assessment
2007
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Genomes in Focus: Development and Applications of CRISPR‐Cas9 Imaging Technologies
2017 StandoutNobel
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
2017 Standout
Imaging Specific Genomic DNA in Living Cells
2016
A New Labeling Method for Methyl Transverse Relaxation-Optimized Spectroscopy NMR Spectra of Alanine Residues
2007
Insights into HIV-1 proviral transcription from integrative structure and dynamics of the Tat:AFF4:P-TEFb:TAR complex
2016 StandoutNobel
3D imaging of Sox2 enhancer clusters in embryonic stem cells
2014 StandoutNobel
Correlations of three-dimensional motion of chromosomal loci in yeast revealed by the double-helix point spread function microscope
2014 StandoutNobel
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
2018 Standout
Molecular Docking: Challenges, Advances and its Use in Drug Discovery Perspective
2018 Standout
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
Integrative structure modeling with the Integrative Modeling Platform
2017
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Multiscale Generalized Born Modeling of Ligand Binding Energies for Virtual Database Screening
2009
Works of Harianto Tjong being referenced
DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces
2007
The three-dimensional genome organization of Drosophila melanogaster through data integration
2017
Producing genome structure populations with the dynamic and automated PGS software
2018
Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
2011
Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
2012
Exploring the spatial and temporal organization of a cell’s proteome
2010
Rational design of a conformation‐switchable Ca2+‐ and Tb3+‐binding protein without the use of multiple coupled metal‐binding sites
2008
G Br 6 NL : A generalized Born method for accurately reproducing solvation energy of the nonlinear Poisson-Boltzmann equation
2007
TopDom: an efficient and deterministic method for identifying topological domains in genomes
2015
Spontaneous conformational change and toxin binding in α7 acetylcholine receptor: Insight into channel activation and inhibition
2008
Population-based 3D genome structure analysis reveals driving forces in spatial genome organization
2016