Citation Impact
Citing Papers
Defining characteristics and conservation of poorly annotated genes in Caenorhabditis elegans using WormCat 2.0
2022
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Machine learning predicts new anti-CRISPR proteins
2020 StandoutNobel
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
2013 StandoutNobel
PIEZO ion channel is required for root mechanotransduction in Arabidopsis thaliana
2021 StandoutNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis
2012
Analysis of structured and intrinsically disordered regions of transmembrane proteins
2009
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Piezo1 ion channel pore properties are dictated by C-terminal region
2015 StandoutNobel
Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
2015 StandoutNobel
A Comprehensive Comparison of Transmembrane Domains Reveals Organelle-Specific Properties
2010
Microenvironmental modulation breaks intrinsic pH limitations of nanozymes to boost their activities
2024 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Pan-Genotype Hepatitis E Virus Replication in Stem Cell–Derived Hepatocellular Systems
2017 StandoutNobel
Enhancing extracellular vesicle cargo loading and functional delivery by engineering protein-lipid interactions
2024 StandoutNobel
Discoveries in structure and physiology of mechanically activated ion channels
2020 StandoutNatureNobel
The Structure of a Conserved Piezo Channel Domain Reveals a Topologically Distinct β Sandwich Fold
2014
Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System
2015 Standout
SignalP 5.0 improves signal peptide predictions using deep neural networks
2019 Standout
TMC1 Forms the Pore of Mechanosensory Transduction Channels in Vertebrate Inner Ear Hair Cells
2018
Hydrophobic mismatch drives self-organization of designer proteins into synthetic membranes
2024 StandoutNobel
An Integrated Framework Advancing Membrane Protein Modeling and Design
2015
High-Resolution Modeling of Transmembrane Helical Protein Structures from Distant Homologues
2014 StandoutNobel
Membrane-protein topology
2006
A homozygous nonsense mutation in the gene for Tmem79, a component for the lamellar granule secretory system, produces spontaneous eczema in an experimental model of atopic dermatitis
2013
APPRIS: annotation of principal and alternative splice isoforms
2012
Analysis of membrane proteins in metagenomics: Networks of correlated environmental features and protein families
2010
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
2015
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
2012 StandoutNobel
The Structure of a Receptor with Two Associating Transmembrane Domains on the Cell Surface: Integrin αIIbβ3
2009 StandoutNobel
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Mitochondria: In Sickness and in Health
2012 Standout
Expediting topology data gathering for the TOPDB database
2014
HHsenser: exhaustive transitive profile search using HMM-HMM comparison
2006
An HMM posterior decoder for sequence feature prediction that includes homology information
2005
Piezos thrive under pressure: mechanically activated ion channels in health and disease
2017 StandoutNobel
LRRC8 proteins share a common ancestor with pannexins, and may form hexameric channels involved in cell‐cell communication
2012
Structure of the mechanically activated ion channel Piezo1
2017 StandoutNatureNobel
The ins and outs of hepatitis C virus entry and assembly
2013 StandoutNobel
Transmembrane Topologies of Ca2+-permeable Mechanosensitive Channels MCA1 and MCA2 in Arabidopsis thaliana
2015
Evolution and classification of the CRISPR–Cas systems
2011 StandoutNobel
Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors
2015
SWELL1, a Plasma Membrane Protein, Is an Essential Component of Volume-Regulated Anion Channel
2014 StandoutNobel
The Phyre2 web portal for protein modeling, prediction and analysis
2015 Standout
Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter
2011 StandoutNature
Identification and Analysis of Putative Homologues of Mechanosensitive Channels in Pathogenic Protozoa
2013
Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks
2008
Architecture of the mammalian mechanosensitive Piezo1 channel
2015 Nature
Endogenous Piezo1 Can Confound Mechanically Activated Channel Identification and Characterization
2017 StandoutNobel
Structure, substrate recognition and initiation of hyaluronan synthase
2022 Nature
LRRC8 Proteins Form Volume-Regulated Anion Channels that Sense Ionic Strength
2016 StandoutNobel
PhyloGene server for identification and visualization of co-evolving proteins using normalized phylogenetic profiles
2015 StandoutNobel
Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing
2012
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Improving the accuracy of transmembrane protein topology prediction using evolutionary information
2007
Exploring the nature of the translocon-assisted protein insertion
2012 StandoutNobel
Structure of the human volume regulated anion channel
2018 StandoutNobel
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
2010 Standout
Genetic Analysis of the Carboxy-Terminal Region of the Hepatitis C Virus Core Protein
2009 StandoutNobel
Mitochondrial Reactive Oxygen Species (ROS) and ROS-Induced ROS Release
2014 Standout
Correct machine learning on protein sequences: a peer-reviewing perspective
2015
Free-energy cost for translocon-assisted insertion of membrane proteins
2011
Computational Prediction of the Heterodimeric and Higher-Order Structure of gpE1/gpE2 Envelope Glycoproteins Encoded by Hepatitis C Virus
2017 StandoutNobel
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
DeepSig: deep learning improves signal peptide detection in proteins
2017
Hepatitis C Virus NS2 Protein Contributes to Virus Particle Assembly via Opposing Epistatic Interactions with the E1-E2 Glycoprotein and NS3-NS4A Enzyme Complexes
2009
Signal-3L 2.0: A Hierarchical Mixture Model for Enhancing Protein Signal Peptide Prediction by Incorporating Residue-Domain Cross-Level Features
2017
Prediction of membrane protein structures with complex topologies using limited constraints
2009 StandoutNobel
Protein contents in biological membranes can explain abnormal solvation of charged and polar residues
2009
Tissue-specific contributions of Tmem79 to atopic dermatitis and mast cell-mediated histaminergic itch
2018 StandoutNobel
Genetic and Functional Characterization of the N-Terminal Region of the Hepatitis C Virus NS2 Protein
2013 StandoutNobel
Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers
2011
Structure-based membrane dome mechanism for Piezo mechanosensitivity
2017 Nobel
On the energetics of translocon-assisted insertion of charged transmembrane helices into membranes
2010 StandoutNobel
Structural basis for gating charge movement in the voltage sensor of a sodium channel
2011 StandoutNobel
Protein contact prediction using metagenome sequence data and residual neural networks
2019 StandoutNobel
Works of Håkan Viklund being referenced
Prediction of membrane-protein topology from first principles
2008
TOPCONS: consensus prediction of membrane protein topology
2009
Structural Classification and Prediction of Reentrant Regions in α-Helical Transmembrane Proteins: Application to Complete Genomes
2006
PONGO: a web server for multiple predictions of all-alpha transmembrane proteins
2006
Best α‐helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
2004
Estimating the length of transmembrane helices using Z‐coordinate predictions
2007
SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology
2008
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
2008
ZPRED: Predicting the distance to the membrane center for residues in α-helical membrane proteins
2006