Citation Impact
Citing Papers
DeepAffinity: interpretable deep learning of compound–protein affinity through unified recurrent and convolutional neural networks
2019
Improved de novo structure prediction in CASP 11 by incorporating coevolution information into Rosetta
2015 StandoutNobel
Structure of the human TRPM4 ion channel in a lipid nanodisc
2017 StandoutScienceNobel
First-in-Human Study Testing a New Radioenhancer Using Nanoparticles (NBTXR3) Activated by Radiation Therapy in Patients with Locally Advanced Soft Tissue Sarcomas
2016
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
A comprehensive comparison of comparative RNA structure prediction approaches
2004
The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation
2020 Standout
DeepGene: an advanced cancer type classifier based on deep learning and somatic point mutations
2016
Class prediction for high-dimensional class-imbalanced data
2010
Navigating freely-available software tools for metabolomics analysis
2017
Unraveling the meaning of chemical shifts in protein NMR
2017
Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set
2011 StandoutNobel
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
2009 Standout
Detection of reliable and unexpected protein fold predictions using 3D-Jury
2003
Missing value imputation for gene expression data: computational techniques to recover missing data from available information
2010
Superfamily Assignments for the Yeast Proteome through Integration of Structure Prediction with the Gene Ontology
2007 StandoutNobel
Recent developments in the MAFFT multiple sequence alignment program
2008 Standout
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
SignalP 5.0 improves signal peptide predictions using deep neural networks
2019 Standout
Approaches to treat immune hot, altered and cold tumours with combination immunotherapies
2019 Standout
Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker
2013 StandoutNobel
Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM
2005 StandoutNobel
ViennaRNA Package 2.0
2011 Standout
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
2014 Standout
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
2017 Standout
High-Resolution Comparative Modeling with RosettaCM
2013 StandoutNobel
The Vienna RNA Websuite
2008 Standout
The trRosetta server for fast and accurate protein structure prediction
2021 StandoutNobel
Current and future perspectives of liquid biopsies in genomics-driven oncology
2018 Standout
Variations on RNA folding and alignment: lessons from Benasque
2007
Ranking predicted protein structures with support vector regression
2007 StandoutNobel
Schistosomiasis
2018 Standout
Massively parallel determination and modeling of endonuclease substrate specificity
2014 StandoutNobel
The food metabolome: a window over dietary exposure
2014
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Fast evolutionary rates associated with functional loss in class I glucose transporters of Schistosoma mansoni
2015
Improving 3D structure prediction from chemical shift data
2013 StandoutNobel
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
GeNMR: a web server for rapid NMR-based protein structure determination
2009
De novo structure generation using chemical shifts for proteins with high‐sequence identity but different folds
2010 StandoutNobel
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Raptorx: Exploiting structure information for protein alignment by statistical inference
2011
Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization
2007
Protein structure prediction and analysis using the Robetta server
2004 StandoutNobel
Analytical Methods in Untargeted Metabolomics: State of the Art in 2015
2015
Practical lessons from protein structure prediction
2005
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data
2008
De novo design of a non-local β-sheet protein with high stability and accuracy
2018 StandoutNobel
Template-based protein structure modeling using the RaptorX web server
2012
The Phyre2 web portal for protein modeling, prediction and analysis
2015 Standout
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
The Artificial Intelligence Clinician learns optimal treatment strategies for sepsis in intensive care
2018 Standout
Automated structure determination from NMR spectra
2008
Artificial intelligence in radiology
2018 Standout
De novo protein structure generation from incomplete chemical shift assignments
2008 StandoutNobel
GeneSilico protein structure prediction meta-server
2003
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
2008
Design and Implementation of Smart Home Control Systems Based on Wireless Sensor Networks and Power Line Communications
2014 Standout
METLIN: A Technology Platform for Identifying Knowns and Unknowns
2018
Connectivity, Coverage and Placement in Wireless Sensor Networks
2009
On the Universe of Protein Folds
2013 StandoutNobel
Current state of the art of mass spectrometry-based metabolomics studies – a review focusing on wide coverage, high throughput and easy identification
2015
Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints
2018
Artificial intelligence in drug discovery and development
2020 Standout
Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects
2015
Improved methods for the imputation of missing data by nearest neighbor methods
2015
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
One contact for every twelve residues allows robust and accurate topology‐level protein structure modeling
2013 StandoutNobel
High-performance signal peptide prediction based on sequence alignment techniques
2008
Local similarity in RNA secondary structures
2004
Comparative Protein Structure Modeling Using MODELLER
2016 Standout
Automatic structure prediction of oligomeric assemblies using Robetta in CASP12
2017 StandoutNobel
PubChem 2023 update
2022 Standout
Accurate Automated Protein NMR Structure Determination Using Unassigned NOESY Data
2009 StandoutNobel
Learning from class-imbalanced data: Review of methods and applications
2016 Standout
Automatic Chemical Structure Annotation of an LC–MSn Based Metabolic Profile from Green Tea
2013
Feature selection for high-dimensional class-imbalanced data sets using Support Vector Machines
2014
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
PubChem in 2021: new data content and improved web interfaces
2020 Standout
Protein structure prediction for the male-specific region of the human Y chromosome
2004 StandoutNobel
Chemical Tagging in Mass Spectrometry for Systems Biology
2018
Boosting Protein Threading Accuracy
2009
Lightweight comparison of RNAs based on exact sequence–structure matches
2009
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Nonnative Interactions in the FF Domain Folding Pathway from an Atomic Resolution Structure of a Sparsely Populated Intermediate: An NMR Relaxation Dispersion Study
2011 StandoutNobel
Works of Guohui Lin being referenced
A stable gene selection in microarray data analysis
2006
Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability
2008
Parallel Metabolomic Profiling of Cerebrospinal Fluid and Serum for Identifying Biomarkers of Injury Severity after Acute Human Spinal Cord Injury
2016
Resolution-by-proxy: a simple measure for assessing and comparing the overall quality of NMR protein structures
2012
PPT-DB: the protein property prediction and testing database
2007
A General Edit Distance between RNA Structures
2002
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling
2005
PEP Search in MyCompoundID: Detection and Identification of Dipeptides and Tripeptides Using Dimethyl Labeling and Hydrophilic Interaction Liquid Chromatography Tandem Mass Spectrometry
2014
Editorial, COCOON 2007 special issue
2008
PROTEIN THREADING BY LINEAR PROGRAMMING
2002
PROTEIN-CHEMICAL INTERACTION PREDICTION VIA KERNELIZED SPARSE LEARNING SVM
2012
The longest common subsequence problem for sequences with nested arc annotations
2002
ITERATED LOCAL LEAST SQUARES MICROARRAY MISSING VALUE IMPUTATION
2006
Steiner tree problem with minimum number of Steiner points and bounded edge-length
1999
Signed genome rearrangement by reversals and transpositions: models and approximations
2001
Approximations for Steiner Trees with Minimum Number of Steiner Points
2000
MyCompoundID: Using an Evidence-Based Metabolome Library for Metabolite Identification
2013
MyCompoundID MS/MS Search: Metabolite Identification Using a Library of Predicted Fragment-Ion-Spectra of 383,830 Possible Human Metabolites
2015
DnsID in MyCompoundID for Rapid Identification of Dansylated Amine- and Phenol-Containing Metabolites in LC–MS-Based Metabolomics
2015