Citation Impact
Citing Papers
Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
2015 StandoutScience
STAR: ultrafast universal RNA-seq aligner
2012 Standout
TDP-43 repression of nonconserved cryptic exons is compromised in ALS-FTD
2015 Science
Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing
2016 Science
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
2014 Standout
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
HNRNPA2B1 Is a Mediator of m6A-Dependent Nuclear RNA Processing Events
2015
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging
2015
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
2014
NSun2-Mediated Cytosine-5 Methylation of Vault Noncoding RNA Determines Its Processing into Regulatory Small RNAs
2013
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m 6 A-demethylation of NANOG mRNA
2016 StandoutNobel
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs
2015
The role of FUS gene variants in neurodegenerative diseases
2014
MALAT1 — a paradigm for long noncoding RNA function in cancer
2013
Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability
2011
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Long non‐coding RNA gadd7 interacts with TDP‐43 and regulates Cdk6 mRNA decay
2012
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
2016
irCLIP platform for efficient characterization of protein–RNA interactions
2016
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
2014
Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR
2011
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
2013
N6-methyladenosine Modulates Messenger RNA Translation Efficiency
2015 Standout
Post-transcriptional gene regulation by mRNA modifications
2016 Standout
Genes and pathways underlying regional and cell type changes in Alzheimer's disease
2013
MicroRNAs in Amoebozoa: Deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs
2012
RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites
2014
Hallmarks of aging: An expanding universe
2023 Standout
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
2013
Identification and consequences of miRNA–target interactions — beyond repression of gene expression
2014
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE
2016
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Mechanisms of FUS mutations in familial amyotrophic lateral sclerosis
2016
Target Repression Induced by Endogenous microRNAs: Large Differences, Small Effects
2014
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Viral crosslinking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes
2020
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
2011
Decoding ALS: from genes to mechanism
2016 StandoutNature
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
RNA-binding proteins in neurodegeneration: Seq and you shall receive
2015
iCLIP: Protein–RNA interactions at nucleotide resolution
2013
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
2011 Standout
The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites
2014
Metazoan MicroRNAs
2018 Standout
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
RNA helicase DDX21 coordinates transcription and ribosomal RNA processing
2014 Nature
RNA-binding proteins with prion-like domains in ALS and FTLD-U
2011
Endogenous miRNA and Target Concentrations Determine Susceptibility to Potential ceRNA Competition
2014
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Misregulated RNA processing in amyotrophic lateral sclerosis
2012
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
2011
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
2012
Integrative Genome-wide Analysis Reveals Cooperative Regulation of Alternative Splicing by hnRNP Proteins
2012 Nobel
Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss
2015
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
2015 Standout
The central role of RNA in human development and cognition
2011
Dissecting noncoding and pathogen RNA–protein interactomes
2014
Protein-RNA networks revealed through covalent RNA marks
2015
Intronic RNAs mediate EZH2 regulation of epigenetic targets
2012
A snoRNA modulates mRNA 3′ end processing and regulates the expression of a subset of mRNAs
2017
TDP-43 high throughput screening analyses in neurodegeneration: Advantages and pitfalls
2013
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
2015 Standout
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Protein–RNA interactions: new genomic technologies and perspectives
2012
Long Noncoding RNAs with snoRNA Ends
2012
A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation
2015 Standout
A majority of m6A residues are in the last exons, allowing the potential for 3′ UTR regulation
2015
Pre-mRNA splicing: where and when in the nucleus
2011
The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease
2012
HITS‐CLIP: panoramic views of protein–RNA regulation in living cells
2010
The dynamic epitranscriptome: N6-methyladenosine and gene expression control
2014
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
2017
N6-methyladenosine-dependent regulation of messenger RNA stability
2013 StandoutNature
Functional consequences of developmentally regulated alternative splicing
2011
Axonal Transport of TDP-43 mRNA Granules Is Impaired by ALS-Causing Mutations
2014
Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome
2015
From RNA-seq reads to differential expression results
2010
Noncoding RNA and Polycomb recruitment
2013
Counting absolute numbers of molecules using unique molecular identifiers
2011
Degradation of Cellular miR-27 by a Novel, Highly Abundant Viral Transcript Is Important for Efficient Virus Replication In Vivo
2012
m6A RNA methylation promotes XIST-mediated transcriptional repression
2016 Nature
RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins
2014 Nobel
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43
2011
Alternative splicing in aging and longevity
2019
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression
2013
Small RNA library preparation for next-generation sequencing by single ligation, extension and circularization technology
2011
Landscape and variation of RNA secondary structure across the human transcriptome
2014 Nature
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
2012
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
C to U RNA editing mediated by APOBEC 1 requires RNA ‐binding protein RBM 47
2014
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
Structural, super-resolution microscopy analysis of paraspeckle nuclear body organization
2016
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
2011 StandoutScience
Characterizing 5-methylcytosine in the mammalian epitranscriptome
2013
Identification of DNA cleavage- and recombination-specific hnRNP cofactors for activation-induced cytidine deaminase
2015 StandoutNobel
Structural and Mechanistic Insights into Poly(uridine) Tract Recognition by the hnRNP C RNA Recognition Motif
2014
PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast
2014
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
2012
Downregulation of MicroRNA-9 in iPSC-Derived Neurons of FTD/ALS Patients with TDP-43 Mutations
2013
2016
The Long-Term Stability of the Human Gut Microbiota
2013 StandoutScience
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Methods for comprehensive experimental identification of RNA-protein interactions
2014
Functional requirements of AID’s higher order structures and their interaction with RNA-binding proteins
2016 StandoutNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
TDP-43 promotes microRNA biogenesis as a component of the Drosha and Dicer complexes
2012
Works of Gregor Rot being referenced
iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution
2011
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
2010
CELF4 Regulates Translation and Local Abundance of a Vast Set of mRNAs, Including Genes Associated with Regulation of Synaptic Function
2012
iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions
2010
Conserved developmental transcriptomes in evolutionarily divergent species
2010
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain
2012
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain
2011
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
2011
iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution
2011