Standout Papers

CheckM: assessing the quality of microbial geno... 2004 2026 2011 2018 7.2k
  1. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (2015)
    Donovan H. Parks, Michael Imelfort et al. Genome Research
  2. STAMP: statistical analysis of taxonomic and functional profiles (2014)
    Donovan H. Parks, Gene W. Tyson et al. Bioinformatics
  3. Community structure and metabolism through reconstruction of microbial genomes from the environment (2004)
    Gene W. Tyson, Jarrod Chapman et al. Nature
  4. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life (2017)
    Donovan H. Parks, Christian Rinke et al. Nature Microbiology
  5. Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage (2013)
    Mohamed Fauzi Haroon, Shihu Hu et al. Nature
  6. Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes (2013)
    Mads Albertsen, Philip Hugenholtz et al. Nature Biotechnology
  7. Microbial community gene expression in ocean surface waters (2008)
    Jorge Frias‐Lopez, Yanmei Shi et al. Proceedings of the National Academy of Sciences
  8. Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics (2015)
    Paul N. Evans, Donovan H. Parks et al. Science
  9. An evolving view of methane metabolism in the Archaea (2019)
    Paul N. Evans, Joel A. Boyd et al. Nature Reviews Microbiology
  10. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning (2023)
    Alex Chklovski, Donovan H. Parks et al. Nature Methods
  11. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota (2016)
    Inka Vanwonterghem, Paul N. Evans et al. Nature Microbiology
  12. Genome-centric view of carbon processing in thawing permafrost (2018)
    Ben J. Woodcroft, Caitlin M. Singleton et al. Nature
  13. A methanotrophic archaeon couples anaerobic oxidation of methane to Fe(III) reduction (2018)
    Chen Cai, Andy O Leu et al. The ISME Journal
  14. Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae (2020)
    Andy O Leu, Chen Cai et al. The ISME Journal
  15. CoverM: read alignment statistics for metagenomics (2025)
    Samuel T. N. Aroney, R.B. Newell et al. Bioinformatics

Immediate Impact

8 by Nobel laureates 62 from Science/Nature 143 standout
Sub-graph 1 of 14

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18 intermediate papers

Works of Gene W. Tyson being referenced

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
2017 Standout
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
2015 Standout
and 8 more

Author Peers

Author Last Decade Papers Cites
Gene W. Tyson 13736 14730 5363 158 28.3k
David A. Stahl 16855 12176 6210 218 30.8k
William B. Whitman 11966 15276 3353 281 25.4k
Gerard Muyzer 16019 9846 7129 284 34.7k
Donovan H. Parks 19208 22687 5393 62 42.2k
James R. Cole 12770 15878 2726 88 34.9k
Karl‐Heinz Schleifer 11968 11769 2366 159 27.5k
Patrick D. Schloss 13734 22101 3048 196 43.0k
Wolfgang Ludwig 22768 22479 6050 301 49.0k
Gary L. Andersen 10424 15405 2385 210 33.7k
Edward F. DeLong 24773 17590 10208 229 37.2k

All Works

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2026