Citation Impact
Citing Papers
HTSeq—a Python framework to work with high-throughput sequencing data
2014 Standout
DNA capture by a CRISPR-Cas9–guided adenine base editor
2020 StandoutScienceNobel
Translational Repression and eIF4A2 Activity Are Critical for MicroRNA-Mediated Gene Regulation
2013 Science
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Kraken: ultrafast metagenomic sequence classification using exact alignments
2014 Standout
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Genome-wide prediction of disease variant effects with a deep protein language model
2023
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs
2016 Standout
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage
2016 StandoutNature
Ribosome Profiling Provides Evidence that Large Noncoding RNAs Do Not Encode Proteins
2013
Phage-assisted evolution of an adenine base editor with improved Cas domain compatibility and activity
2020 StandoutNobel
Pathogenic missense protein variants affect different functional pathways and proteomic features than healthy population variants
2021
Genetic effects on gene expression across human tissues
2017 StandoutNature
Accurate classification of BRCA1 variants with saturation genome editing
2018 Nature
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
2016 Standout
Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile
2014 StandoutNature
Predicting the clinical impact of human mutation with deep neural networks
2018
Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes
2017
GenBank
2014
Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein
2018
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Hallmarks of aging: An expanding universe
2023 Standout
MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
2012
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
Human housekeeping genes, revisited
2013
Natural Selection in the Great Apes
2016
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
From forest to field: Perennial fruit crop domestication
2011 Standout
IMG 4 version of the integrated microbial genomes comparative analysis system
2013
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
2017 StandoutNature
eggNOG v4.0: nested orthology inference across 3686 organisms
2013
Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosis
2015 Standout
Database resources of the National Center for Biotechnology Information: update
2003 Standout
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
Update on RefSeq microbial genomes resources
2014
Metazoan MicroRNAs
2018 Standout
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Genomics of the origin and evolution of Citrus
2018 StandoutNature
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
2016 Standout
STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions
2021
The impact of rare variation on gene expression across tissues
2017 Nature
Mash: fast genome and metagenome distance estimation using MinHash
2016 Standout
Search-and-replace genome editing without double-strand breaks or donor DNA
2019 StandoutNature
A comprehensive overview of exosomes as drug delivery vehicles — Endogenous nanocarriers for targeted cancer therapy
2014
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Mutation effects predicted from sequence co-variation
2017
Exosomes facilitate therapeutic targeting of oncogenic KRAS in pancreatic cancer
2017 StandoutNature
Efficient generation of mouse models of human diseases via ABE- and BE-mediated base editing
2018 Standout
A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase
2020
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
KEGG as a reference resource for gene and protein annotation
2015 Standout
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Systematic discovery of natural CRISPR-Cas12a inhibitors
2018 StandoutScienceNobel
A genomic update on clostridial phylogeny: G ram‐negative spore formers and other misplaced clostridia
2013
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
Predicting effective microRNA target sites in mammalian mRNAs
2015 Standout
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
2016 StandoutScience
CRISPR-CasΦ from huge phages is a hypercompact genome editor
2020 StandoutScienceNobel
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Biological mechanisms of aging predict age‐related disease co‐occurrence in patients
2022
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Prioritizing genes for systematic variant effect mapping
2020
Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger
2013 Standout
PubChem 2019 update: improved access to chemical data
2018 Standout
De novo design of small beta barrel proteins
2023 StandoutNobel
A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE)
2014
A Deep Neural Network for Predicting and Engineering Alternative Polyadenylation
2019
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
Functionally diverse type V CRISPR-Cas systems
2018 Science
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Chemical Glycoproteomics
2016 StandoutNobel
Works of Garth Brown being referenced
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
2011
ClinVar: public archive of interpretations of clinically relevant variants
2015 Standout
DNA Sequence Variation and Selection of Tag Single-Nucleotide Polymorphisms at Candidate Genes for Drought-Stress Response in Pinus taeda L.
2005
Gene: a gene-centered information resource at NCBI
2014