Citation Impact
Citing Papers
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes
2007 StandoutScience
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
Genes Involved in Formation of Structured Multicellular Communities by Bacillus subtilis
2004
Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines
2019
Bioinformatics analysis of disordered proteins in prokaryotes
2011
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
2013
Reproducible and Consistent Quantification of the Saccharomyces cerevisiae Proteome by SWATH-mass spectrometry *
2015
LinkedOmics: analyzing multi-omics data within and across 32 cancer types
2017 Standout
Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag)
2018 StandoutNobel
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
2010 Standout
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
2015
PRIDE: Quality control in a proteomics data repository
2012
Navigating freely-available software tools for metabolomics analysis
2017
MassChroQ: A versatile tool for mass spectrometry quantification
2011
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
2010 StandoutNature
Universal Spectrum Identifier for mass spectra
2021
The GalNAc-type O-Glycoproteome of CHO Cells Characterized by the SimpleCell Strategy
2014
The OtsAB Pathway Is Essential for Trehalose Biosynthesis in Mycobacterium tuberculosis
2005
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
A computationally engineered RAS rheostat reveals RAS–ERK signaling dynamics
2016 StandoutNobel
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
2011 Standout
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
2020 StandoutNobel
Oral multispecies biofilm development and the key role of cell–cell distance
2010 Standout
Methods, algorithms and tools in computational proteomics: A practical point of view
2007
Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis
2015 StandoutNobel
The Units Ontology: a tool for integrating units of measurement in science
2012
MaxDIA enables library-based and library-free data-independent acquisition proteomics
2021
Escherichia coli AspP activity is enhanced by macromolecular crowding and by both glucose‐1,6‐bisphosphate and nucleotide‐sugars
2007
Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences
2022 StandoutNobel
Taxonomy, phylogeny and molecular epidemiology of Echinococcus multilocularis: From fundamental knowledge to health ecology
2015
MS-GF+ makes progress towards a universal database search tool for proteomics
2014
Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions
2016
LYTACs that engage the asialoglycoprotein receptor for targeted protein degradation
2021 StandoutNobel
Data standards can boost metabolomics research, and if there is a will, there is a way
2015
Rapid online buffer exchange for screening of proteins, protein complexes and cell lysates by native mass spectrometry
2020 StandoutNobel
Study and design of stability in GH5 cellulases
2011
Selective stalling of human translation through small-molecule engagement of the ribosome nascent chain
2017 StandoutNobel
Informed-Proteomics: open-source software package for top-down proteomics
2017
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
The biofilm matrix
2010 Standout
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
2016 update of the PRIDE database and its related tools
2015 Standout
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
2015 Standout
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications
2019
The ChEMBL database in 2017
2016 Standout
RNA Replicon Delivery via Lipid-Complexed PRINT Protein Particles
2013
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data
2011
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
2012
The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium
2012
Introducing the PRIDE Archive RESTful web services
2015
A public repository for mass spectrometry imaging data
2014
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
Processing and classification of protein mass spectra
2006
Probing the Mycobacterial Trehalome with Bioorthogonal Chemistry
2012 StandoutNobel
Hemicelluloses for fuel ethanol: A review
2010
A Guide to Mass Spectrometry-Based Quantitative Proteomics
2018
Engineered Nanoparticles for Drug Delivery in Cancer Therapy
2014 Standout
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
2014
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
2008 Standout
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics
2017
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data
2020
Research on the Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, According to the HUPO Human Proteome Project
2020
The jPOST environment: an integrated proteomics data repository and database
2018
Large‐scale tandem mass spectrum clustering using fast nearest neighbor searching
2021
Identifying novel biomarkers through data mining—A realistic scenario?
2014
The metaRbolomics Toolbox in Bioconductor and beyond
2019
Exploring the potential of public proteomics data
2015
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects
2015
TOPP—the OpenMS proteomics pipeline
2007
Soil enzymes in a changing environment: Current knowledge and future directions
2012 Standout
Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage
2020
Chemicals from lignin: an interplay of lignocellulose fractionation, depolymerisation, and upgrading
2018 Standout
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
2018 Standout
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Impact of antibiotic treatment and host innate immune pressure on enterococcal adaptation in the human bloodstream
2019
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics
2019
Lactic acid bacteria as functional starter cultures for the food fermentation industry
2003 Standout
The CPTAC Data Portal: A Resource for Cancer Proteomics Research
2015
2012
Echinococcosis: Advances in the 21st Century
2019 Standout
Comet: An open‐source MS / MS sequence database search tool
2012
Electron-Based Dissociation Is Needed for O-Glycopeptides Derived from OpeRATOR Proteolysis
2020 StandoutNobel
A Proteomics Search Algorithm Specifically Designed for High-Resolution Tandem Mass Spectra
2013
Making proteomics data accessible and reusable: Current state of proteomics databases and repositories
2014
Transport phenomena in nanofluidics
2008 Standout
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies
2005
Proteomics: from Gel Based to Gel Free
2005
Role of galK and galM in Galactose Metabolism by Streptococcus thermophilus
2007
Copper induces cell death by targeting lipoylated TCA cycle proteins
2022 StandoutScience
A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery
2015
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
Identification of Mechanism-Based Inactivation in P450-Catalyzed Cyclopropanation Facilitates Engineering of Improved Enzymes
2016 StandoutNobel
ms-data-core-api: an open-source, metadata-oriented library for computational proteomics
2015
Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling
2015
Algorithms and design strategies towards automated glycoproteomics analysis
2016
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
2015
Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics
2008
Accurate Mass Measurements in Proteomics
2007
An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics
2013
Bioinformatics Tools for the Interpretation of Metabolomics Data
2017
Lignocellulosic biomass pyrolysis mechanism: A state-of-the-art review
2017 Standout
Biodiversity of Exopolysaccharides Produced by Streptococcus thermophilus Strains Is Reflected in Their Production and Their Molecular and Functional Characteristics
2004
jmzTab: A Java interface to the mzTab data standard
2014
Recent developments in the biosynthesis and applications of heteropolysaccharides from lactic acid bacteria
2001
iProX: an integrated proteome resource
2018
Bioinformatics Strategies in Life Sciences: From Data Processing and Data Warehousing to Biological Knowledge Extraction
2010
How to submit MS proteomics data to ProteomeXchange via the PRIDE database
2014
Updates in metabolomics tools and resources: 2014–2015
2015
Genomic Organization and Molecular Analysis of Virulent Bacteriophage 2972 Infecting an Exopolysaccharide-Producing Streptococcus thermophilus Strain
2005
Metabolic engineering of lactic acid bacteria for the production of nutraceuticals
2002
jmzReader: A Java parser library to process and visualize multiple text and XML‐based mass spectrometry data formats
2012
Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data
2012
A review of feature selection techniques in bioinformatics
2007 Standout
Chemical Glycoproteomics
2016 StandoutNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Fredrik Levander being referenced
Automated methods for improved protein identification by peptide mass fingerprinting
2004
A label-free nano-liquid chromatography–mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients
2009
Automated reporting from gel‐based proteomics experiments using the open source Proteios database application
2007
Trehalose-6-phosphate Phosphorylase Is Part of a Novel Metabolic Pathway for Trehalose Utilization in Lactococcus lactis
2001
TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists
2011
Generic workflow for quality assessment of quantitative label‐free LC‐MS analysis
2011
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
2004
mzML—a Community Standard for Mass Spectrometry Data
2010
An Adaptive Alignment Algorithm for Quality-controlled Label-free LC-MS
2013
Starch-hydrolyzing bacteria from Ethiopian soda lakes
2001
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
2013
Proteome analysis of the xylose‐fermenting mutant yeast strain TMB 3400
2009
Numerical Compression Schemes for Proteomics Mass Spectrometry Data
2014
Exopolysaccharide-producing strains of thermophilic lactic acid bacteria cluster into groups according to their EPS structure
2001
Small-scale analysis of exopolysaccharides from Streptococcus thermophilus grown in a semi-defined medium
2001
The Proteios Software Environment: An Extensible Multiuser Platform for Management and Analysis of Proteomics Data
2009
Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets
2014
Representation of selected‐reaction monitoring data in the mzQuantML data standard
2015
Improved Label-Free LC-MS Analysis by Wavelet-Based Noise Rejection
2010
NormalyzerDE: Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis
2018
Physiological Role of β-Phosphoglucomutase in Lactococcus lactis
2001
Enhanced Exopolysaccharide Production by Metabolic Engineering of Streptococcus thermophilus
2002
Requirement for Phosphoglucomutase in Exopolysaccharide Biosynthesis in Glucose- and Lactose-Utilizing Streptococcus thermophilus
2001
Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification
2012