Citation Impact
Citing Papers
The Spatial Organization of the Human Genome
2013
Spatially resolved, highly multiplexed RNA profiling in single cells
2015 StandoutScience
A noninflammatory mRNA vaccine for treatment of experimental autoimmune encephalomyelitis
2021 StandoutScienceNobel
microRNA-Associated Progression Pathways and Potential Therapeutic Targets Identified by Integrated mRNA and microRNA Expression Profiling in Breast Cancer
2011
A Sulfilimine Bond Identified in Collagen IV
2009 StandoutScienceNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Thresholds for therapies: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2009
2009
Hypoxia-inducible factors and RAB22A mediate formation of microvesicles that stimulate breast cancer invasion and metastasis
2014 StandoutNobel
Frequent PTEN genomic alterations and activated phosphatidylinositol 3-kinase pathway in basal-like breast cancer cells
2008
Comprehensive molecular portraits of human breast tumours
2012 StandoutNature
Biologic markers determine both the risk and the timing of recurrence in breast cancer
2011
Strategies for subtypes—dealing with the diversity of breast cancer: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2011
2011 Standout
Is gene array testing to be considered routine now?
2011
Triple-Negative Breast Cancer
2010 Standout
Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases
2016 StandoutNobel
The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy
2015 StandoutNobel
The molecular underpinning of lobular histological growth pattern: a genome‐wide transcriptomic analysis of invasive lobular carcinomas and grade‐ and molecular subtype‐matched invasive ductal carcinomas of no special type
2009
Interpretation of Shotgun Proteomic Data
2005
Leishmaniasis
2018 Standout
The contribution of gene expression profiling to breast cancer classification, prognostication and prediction: a retrospective of the last decade
2009
Structural basis of starvation-induced assembly of the autophagy initiation complex
2014 StandoutNobel
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
2014 StandoutNature
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
Methods, algorithms and tools in computational proteomics: A practical point of view
2007
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
2012 StandoutNature
Global Changes in the Mammary Epigenome Are Induced by Hormonal Cues and Coordinated by Ezh2
2013
Autophagy: Renovation of Cells and Tissues
2011 Standout
Hypoxia drives glucose transporter 3 expression through hypoxia-inducible transcription factor (HIF)–mediated induction of the long noncoding RNA NICI
2019 StandoutNobel
Histological and molecular types of breast cancer: is there a unifying taxonomy?
2009
mTOR Signaling in Growth, Metabolism, and Disease
2017 Standout
Insight into the heterogeneity of breast cancer through next-generation sequencing
2011
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas
2011
Integrated genomic characterization of endometrial carcinoma
2013 StandoutNature
PD-1 and PD-L1 Immune Checkpoint Blockade to Treat Breast Cancer
2016 Standout
Public proteomic MS repositories and pipelines: available tools and biological applications
2007
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Analysis and validation of proteomic data generated by tandem mass spectrometry
2007
Rethinking schizophrenia
2010 StandoutNature
Evaluation of Factors Related to Late Recurrence - Later than 10 Years after the Initial Treatment - in Primary Breast Cancer
2013 Standout
Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers
2009
Search-and-replace genome editing without double-strand breaks or donor DNA
2019 StandoutNature
MassMatrix: A database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data
2009
Association of the Endobiont Double-Stranded RNA Virus LRV1 With Treatment Failure for Human Leishmaniasis Caused byLeishmania braziliensisin Peru and Bolivia
2015
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Gene-Expression Signatures in Breast Cancer
2009
GOBO: Gene Expression-Based Outcome for Breast Cancer Online
2011
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
Energy Metabolism in the Liver
2014 Standout
Copy Number Variations in Schizophrenia: Critical Review and New Perspectives on Concepts of Genetics and Disease
2010
A Comparison of Gene Set Analysis Methods in Terms of Sensitivity, Prioritization and Specificity
2013
Adjuvant therapies for special types of breast cancer
2011
Genes that mediate breast cancer metastasis to lung
2005 StandoutNature
Biological determinants of endocrine resistance in breast cancer
2009
A Face in the Crowd: Recognizing Peptides Through Database Search
2011
Metagenomics and Personalized Medicine
2011
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Cutaneous leishmaniasis: immune responses in protection and pathogenesis
2016
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
2008 Standout
Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book
2004
Glucose transporters in cancer – from tumor cells to the tumor microenvironment
2018
Architecture of an RNA Polymerase II Transcription Pre-Initiation Complex
2013 StandoutScienceNobel
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM
2010
Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
2001 Standout
A comprehensive investigation of proline fragmentation behavior in low-energy collision-induced dissociation peptide mass spectra
2011
Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease
2014
Protein Analysis by Shotgun/Bottom-up Proteomics
2013
A Perspective on Cancer Cell Metastasis
2011 StandoutScience
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
2012 Standout
Mucosal leishmaniasis: A Retrospective Study of 327 Cases from an Endemic Area of Leishmania (Viannia) braziliensis
2017
Target of Rapamycin (TOR) in Nutrient Signaling and Growth Control
2011
Hypoxia-inducible factor 1-dependent expression of adenosine receptor 2B promotes breast cancer stem cell enrichment
2018 StandoutNobel
Statistical and Mechanistic Approaches to Understanding the Gas-Phase Fragmentation Behavior of Methionine Sulfoxide Containing Peptides
2004
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
Chemotherapy induces enrichment of CD47 + /CD73 + /PDL1 + immune evasive triple-negative breast cancer cells
2018 StandoutNobel
Single-chromosome transcriptional profiling reveals chromosomal gene expression regulation
2013
Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies
2005
Camera: a competitive gene set test accounting for inter-gene correlation
2012
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Atg13 HORMA domain recruits Atg9 vesicles during autophagosome formation
2015 StandoutNobel
Metabolic reprogramming and cancer progression
2020 StandoutScience
The regulation of autophagy – unanswered questions
2010
Bioorthogonal Labeling of Human Prostate Cancer Tissue Slice Cultures for Glycoproteomics
2017 StandoutNobel
HIF-1 regulates CD47 expression in breast cancer cells to promote evasion of phagocytosis and maintenance of cancer stem cells
2015 StandoutNobel
Chemotherapy triggers HIF-1–dependent glutathione synthesis and copper chelation that induces the breast cancer stem cell phenotype
2015 StandoutNobel
Diagnosis and Treatment of Leishmaniasis: Clinical Practice Guidelines by the Infectious Diseases Society of America (IDSA) and the American Society of Tropical Medicine and Hygiene (ASTMH)
2016
Quantitative Phosphoproteomics Reveal mTORC1 Activates de Novo Pyrimidine Synthesis
2013 Science
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Inhibition of the oxygen sensor PHD2 in the liver improves survival in lactic acidosis by activating the Cori cycle
2015 StandoutNobel
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
Glycobioinformatics: Current strategies and tools for data mining in MS ‐based glycoproteomics
2012
Chemical Glycoproteomics
2016 StandoutNobel
Miltefosine Susceptibility and Resistance in Leishmania: From the Laboratory to the Field
2016
Works of Frédéric Schütz being referenced
Leishmania RNA Virus Controls the Severity of Mucocutaneous Leishmaniasis
2011 Science
Meta-analysis of gene-expression profiles in breast cancer: towards a unified understanding of breast cancer sub-typing and prognosis signatures
2007
Presence ofLeishmaniaRNA Virus 1 inLeishmania guyanensisIncreases the Risk of First-Line Treatment Failure and Symptomatic Relapse
2015
The effect of translocation-induced nuclear reorganization on gene expression
2010
Segmental copy number variation shapes tissue transcriptomes
2009
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis
2005
Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures
2008
Integrative analysis of RUNX1 downstream pathways and target genes
2008
Hepatic glucose sensing is required to preserve β cell glucose competence
2013
Mining a Tandem Mass Spectrometry Database To Determine the Trends and Global Factors Influencing Peptide Fragmentation
2003
Deriving statistical models for predicting peptide tandem MS product ion intensities
2003
A Proteome Strategy for Fractionating Proteins and Peptides Using Continuous Free-Flow Electrophoresis Coupled Off-Line to Reversed-Phase High-Performance Liquid Chromatography
2004
Overview of Tandem Mass Spectrometry (MS/MS) Database Search Algorithms
2007
The Rapamycin-sensitive Phosphoproteome Reveals That TOR Controls Protein Kinase A Toward Some But Not All Substrates
2010