Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Structures of Cas9 Endonucleases Reveal RNA-Mediated Conformational Activation
2014 StandoutScienceNobel
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Induced-fit tightens pleuromutilins binding to ribosomes and remote interactions enable their selectivity
2007 StandoutNobel
A Sulfilimine Bond Identified in Collagen IV
2009 StandoutScienceNobel
SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
2012 Standout
Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol
2008 StandoutNobel
The accuracy of several multiple sequence alignment programs for proteins
2006
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
2016
M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
2006
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
2001
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
2011 Standout
Structural Basis for Gating and Activation of RyR1
2016 StandoutNobel
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
2004 Standout
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
2004 Standout
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis
2006 StandoutNobel
Recent developments in the MAFFT multiple sequence alignment program
2008 Standout
Comprehensive Evaluation of Protein Structure Alignment Methods: Scoring by Geometric Measures
2005 StandoutNobel
TarO: a target optimisation system for structural biology
2008
MAFFT version 5: improvement in accuracy of multiple sequence alignment
2005 Standout
COACH: profile–profile alignment of protein families using hidden Markov models
2004
An enhanced RNA alignment benchmark for sequence alignment programs
2006
Quality assessment of multiple alignment programs
2002
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database
2003
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
2016 Standout
OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
2003
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
2014 StandoutNobel
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
Visualization of release factor 3 on the ribosome during termination of protein synthesis
2004 Nature
MUSCLE: multiple sequence alignment with high accuracy and high throughput
2004 Standout
What recent ribosome structures have revealed about the mechanism of translation
2009 StandoutNatureNobel
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
2016 StandoutNatureNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats
2009
The Jalview Java alignment editor
2004 Standout
Multiple sequence alignment: In pursuit of homologous DNA positions
2007
Large-scale comparison of protein sequence alignment algorithms with structure alignments
2000
A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain
2019 StandoutNobel
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
A comparison of scoring functions for protein sequence profile alignment
2004
On the Accuracy of Homology Modeling and Sequence Alignment Methods Applied to Membrane Proteins
2006
Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome
2005
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
2008 Standout
DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches
2000
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
RF3 Induces Ribosomal Conformational Changes Responsible for Dissociation of Class I Release Factors
2007 StandoutNobel
ProbCons: Probabilistic consistency-based multiple sequence alignment
2005
Multiple sequence alignments
2005
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
2000 Standout
Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments
2007
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
2011
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
2002 Standout
Multiple alignment of protein sequences with repeats and rearrangements
2006
3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments
2004
A fast structural multiple alignment method for long RNA sequences
2008
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment
2006
RASCAL: rapid scanning and correction of multiple sequence alignments
2003
Growth of novel protein structural data
2007 StandoutNobel
Structure of the STRA6 receptor for retinol uptake
2016 StandoutScienceNobel
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
2014 StandoutNobel
Parallelization of the MAFFT multiple sequence alignment program
2010
APDB: a novel measure for benchmarking sequencealignment methods without reference alignments
2003
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes
2022 StandoutScienceNobel
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Recent progress in multiple sequence alignment: a survey
2002
Combining partial order alignment and progressive multiple sequence alignment increases alignment speed and scalability to very large alignment problems
2004
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
2004 StandoutNobel
Clustal W and Clustal X version 2.0
2007 Standout
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
PROMALS: towards accurate multiple sequence alignments of distantly related proteins
2007
Comparative Protein Structure Modeling Using MODELLER
2007 Standout
Prediction of membrane protein structures with complex topologies using limited constraints
2009 StandoutNobel
PCMA: fast and accurate multiple sequence alignment based on profile consistency
2003
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
2009 Standout
The process of mRNA–tRNA translocation
2007 StandoutNobel
Unusually rapid evolution of Neuroligin-4 in mice
2008 StandoutNobel
Protein structure prediction for the male-specific region of the human Y chromosome
2004 StandoutNobel
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
2009
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
2009 Standout
Comparative Protein Structure Modeling Using Modeller
2006 Standout
Works of Frédéric Plewniak being referenced
MACSIMS : multiple alignment of complete sequences information management system
2006
PipeAlign: a new toolkit for protein family analysis
2003
A comprehensive comparison of multiple sequence alignment programs
1999
Ballast: Blast post-processing based on locally conserved segments
2000
seqMINER: an integrated ChIP-seq data interpretation platform
2010
Towards a reliable objective function for multiple sequence alignments 1 1Edited by J. Karn
2001
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
1999
Multiple alignment of complete sequences (MACS) in the post-genomic era
2001
vALId: VALIDATION OF PROTEIN SEQUENCE QUALITY BASED ON MULTIPLE ALIGNMENT DATA
2005