Citation Impact
Citing Papers
Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics
2013
Docking Flexible Cyclic Peptides with AutoDock CrankPep
2019
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Avogadro: an advanced semantic chemical editor, visualization, and analysis platform
2012 Standout
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
TCMSP: a database of systems pharmacology for drug discovery from herbal medicines
2014 Standout
Confab - Systematic generation of diverse low-energy conformers
2011
Fast and accurate protein structure search with Foldseek
2023 Standout
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
2016
A cell-free platform for the prenylation of natural products and application to cannabinoid production
2019 StandoutNobel
Protein interactions in human pathogens revealed through deep learning
2024 StandoutNobel
Cancer Evolution and the Limits of Predictability in Precision Cancer Medicine
2016
Using tumour phylogenetics to identify the roots of metastasis in humans
2015
Open Babel: An open chemical toolbox
2011 Standout
Assessment of the extent of bacterial growth in reverse osmosis system for improving drinking water quality
2010
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Alignment-free phylogenetics and population genetics
2013
MTiOpenScreen: a web server for structure-based virtual screening
2015
Radiomics: Images Are More than Pictures, They Are Data
2015 Standout
Machine learning for molecular and materials science
2018 StandoutNature
The immune contexture in cancer prognosis and treatment
2017 Standout
Biological roles of glycans
2016 Standout
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
2019 Standout
Selective inhibition of the West Nile virus methyltransferase by nucleoside analogs
2012
Small-Molecule Library Screening by Docking with PyRx
2014 Standout
Mash: fast genome and metagenome distance estimation using MinHash
2016 Standout
Emerging Biological Principles of Metastasis
2017 Standout
Designing hydrogels for controlled drug delivery
2016 Standout
Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review
2013 Standout
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
The ChEMBL database in 2017
2016 Standout
Mercury 4.0: from visualization to analysis, design and prediction
2019 Standout
SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules
2017 Standout
Conceptual modelling of genomic information
2000
Comparative assessment of large-scale data sets of protein–protein interactions
2002 StandoutNature
Generation of a reporter yellow fever virus for high throughput antiviral assays
2020 StandoutNobel
Protein structure database search and evolutionary classification
2006
Metastatic colonization by circulating tumour cells
2016 StandoutNature
Ligand Pose and Orientational Sampling in Molecular Docking
2013
Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm
2005
IFITM3 directly engages and shuttles incoming virus particles to lysosomes
2018 StandoutNobel
Generation of crystal structures using known crystal structures as analogues
2016
Development and in vitro assessment of enzymatically-responsive poly(ethylene glycol) hydrogels for the delivery of therapeutic peptides
2014
2017
AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings
2021 Standout
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Microbiological Safety of Drinking Water
2000
A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera
2008
Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing
2012 Standout
Bacterial Biofilms: An Emerging Link to Disease Pathogenesis
2003 Standout
Improved Docking of Polypeptides with Glide
2013
admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties
2012 Standout
Binder jet 3D printing—Process parameters, materials, properties, modeling, and challenges
2020 Standout
Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand
2013 StandoutNobel
Photoinduced reactivity of titanium dioxide
2004 Standout
Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities
2018
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
2014 Standout
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Knowledge-Based Conformer Generation Using the Cambridge Structural Database
2018
Force Field Optimization Guided by Small Molecule Crystal Lattice Data Enables Consistent Sub-Angstrom Protein–Ligand Docking
2021 StandoutNobel
Molecular Docking: Shifting Paradigms in Drug Discovery
2019 Standout
Standard Practices of Reticular Chemistry
2020 StandoutNobel
Better Informed Distance Geometry: Using What We Know To Improve Conformation Generation
2015
Python Materials Genomics (pymatgen): A robust, open-source python library for materials analysis
2012 Standout
Computation-Guided Rational Design of a Peptide Motif That Reacts with Cyanobenzothiazoles via Internal Cysteine–Lysine Relay
2018 StandoutNobel
Molecular Docking: Challenges, Advances and its Use in Drug Discovery Perspective
2018 Standout
Drinking water contamination and treatment techniques
2016 Standout
A bacteriophage endolysin that eliminates intracellular streptococci
2016
Chemistry Takes a Bath: Reactions in Aqueous Media
2018 StandoutNobel
Stapled β-Hairpins Featuring 4-Mercaptoproline
2021 StandoutNobel
Automating human intuition for protein design
2013 StandoutNobel
g_mmpbsa—A GROMACS Tool for High-Throughput MM-PBSA Calculations
2014 Standout
ZINC 15 – Ligand Discovery for Everyone
2015 Standout
Works of Frédéric Guyon being referenced
Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis
2010
A proposal for a standard CORBA interface for genome maps.
1999
Improved greedy algorithm for protein structure reconstruction
2005
PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides
2012
SA-Search: a web tool for protein structure mining based on a Structural Alphabet
2004
Frog2: Efficient 3D conformation ensemble generator for small compounds
2010
Comparing bacterial genomes from linear orders of patterns
2007
Dynamic modelling of bacterial growth in drinking water networks
1996
Comparison of alignment free string distances for complete genome phylogeny
2009