Citation Impact
Citing Papers
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
2009 StandoutScience
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
2003
Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking
2007 StandoutNobel
Cytoplasmic Decay of Intergenic Transcripts in Saccharomyces cerevisiae
2006
Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes
2005 Science
A Novel Plasmid-Based Microarray Screen Identifies Suppressors of rrp6 Δ in Saccharomyces cerevisiae
2006 StandoutNobel
A large-scale full-length cDNA analysis to explore the budding yeast transcriptome
2006
A high-resolution map of transcription in the yeast genome
2006
The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana
2014
A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription
2005
Reconsidering Movement of Eukaryotic mRNAs between Polysomes and P Bodies
2011 StandoutNobel
A role for the Perlman syndrome exonuclease Dis3l2 in the Lin28–let-7 pathway
2013 Nature
Integrated Analysis of Protein Composition, Tissue Diversity, and Gene Regulation in Mouse Mitochondria
2003
H2B Ubiquitylation Plays a Role in Nucleosome Dynamics during Transcription Elongation
2008
Antisense RNA Stabilization Induces Transcriptional Gene Silencing via Histone Deacetylation in S. cerevisiae
2007
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
2008
Influence of Metabolism on Epigenetics and Disease
2013 StandoutNobel
The ribonome: a dominant force in co‐ordinating gene expression
2009
A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers
2010
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
Elevated Proteasome Capacity Extends Replicative Lifespan in Saccharomyces cerevisiae
2011
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
2009 StandoutNature
Genome-wide analysis of long noncoding RNA stability
2012
Origins and Mechanisms of miRNAs and siRNAs
2009 Standout
5′-end surveillance by Xrn2 acts as a shared mechanism for mammalian pre-rRNA maturation and decay
2010
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
ATP-dependent chromatin remodeling shapes the long noncoding RNA landscape
2014
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
2008
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
Rapid, Transcript-Specific Changes in Splicing in Response to Environmental Stress
2007
Mitochondria: In Sickness and in Health
2012 Standout
The complex language of chromatin regulation during transcription
2007 StandoutNature
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
The Histone Chaperone Spt6 Is Required for Activation-induced Cytidine Deaminase Target Determination through H3K4me3 Regulation
2012 StandoutNobel
Rapid tRNA Decay Can Result from Lack of Nonessential Modifications
2006
Metazoan MicroRNAs
2018 Standout
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast
2011 Nature
Noncoding RNA in development
2008
Distinct RNA degradation pathways and 3' extensions of yeast non-coding RNA species
2011
Base-pairing interactions between substrate RNA and H/ACA guide RNA modulate the kinetics of pseudouridylation, but not the affinity of substrate binding by H/ACA small nucleolar ribonucleoproteins
2019
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
2011 StandoutNature
Goulphar: rapid access and expertise for standard two-color microarray normalization methods
2006
Chapter 5 The Role of 3′–5′ Exoribonucleases in RNA Degradation
2009
Wisdom of crowds for robust gene network inference
2012
Bidirectional promoters generate pervasive transcription in yeast
2009 Nature
Genome-wide RNA polymerase II: not genes only!
2008
From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing
2007 StandoutNobel
Roles of Puf proteins in mRNA degradation and translation
2010
Protein-RNA networks revealed through covalent RNA marks
2015
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
A Chromatin-Based Mechanism for Limiting Divergent Noncoding Transcription
2014
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs
2005
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Small RNAs in transcriptional gene silencing and genome defence
2009 Nature
Mitochondrial protein import: from proteomics to functional mechanisms
2010
Preventing Replication Stress to Maintain Genome Stability: Resolving Conflicts between Replication and Transcription
2012
Yeast targets for mRNA methylation
2010
Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
2009 Nature
A triple helix stabilizes the 3′ ends of long noncoding RNAs that lack poly(A) tails
2012
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
Transcription Termination and Nuclear Degradation of Cryptic Unstable Transcripts: A Role for the Nrd1-Nab3 Pathway in Genome Surveillance
2006
RNase J depletion leads to massive changes in mRNA abundance inHelicobacter pylori
2016
A ncRNA Modulates Histone Modification and mRNA Induction in the Yeast GAL Gene Cluster
2008
Dual localization of fumarase is dependent on the integrity of the glyoxylate shunt
2009
Widespread transcription at neuronal activity-regulated enhancers
2010 StandoutNature
The Hallmarks of Aging
2013 Standout
Termination of Cryptic Unstable Transcripts Is Directed by Yeast RNA-Binding Proteins Nrd1 and Nab3
2006
Promoter directionality is controlled by U1 snRNP and polyadenylation signals
2013 Nature
Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1
2011
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Functionality of Intergenic Transcription: An Evolutionary Comparison
2006 StandoutNobel
Exon Tethering in Transcription by RNA Polymerase II
2006
RNA-quality control by the exosome
2006
Global quantification of mammalian gene expression control
2011 StandoutNature
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
The Many Pathways of RNA Degradation
2009
RNA Degradation by the Exosome Is Promoted by a Nuclear Polyadenylation Complex
2005
MEN ε/β nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
2008
Long noncoding RNAs: functional surprises from the RNA world
2009 Standout
PUF proteins: repression, activation and mRNA localization
2010
Transcriptional noise and the fidelity of initiation by RNA polymerase II
2007
Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome
2008
AID Targeting in Antibody Diversity
2011
Nuclear RNA surveillance inSaccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA
2006
Ubiquitylation of histone H2B controls RNA polymerase II transcription elongation independently of histone H3 methylation
2007
In vivo 3′-to-5′ exoribonuclease targetomes of Streptococcus pyogenes
2018 StandoutNobel
New perspectives on the diversification of theRNA interference system: insights from comparative genomics and smallRNA sequencing
2013
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
2008 StandoutScience
The Yng1p Plant Homeodomain Finger Is a Methyl-Histone Binding Module That Recognizes Lysine 4-Methylated Histone H3
2006
Nanoscale distribution of mitochondrial import receptor Tom20 is adjusted to cellular conditions and exhibits an inner-cellular gradient
2011 StandoutNobel
Functionality of Intergenic Transcription: An Evolutionary Comparison
2005 StandoutNobel
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Clustering by Passing Messages Between Data Points
2007 StandoutScience
Decrease in topoisomerase I is responsible for activation-induced cytidine deaminase (AID)-dependent somatic hypermutation
2011 StandoutNobel
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
2008 Science
Translocation of Proteins into Mitochondria
2007
Temporal networks
2012 Standout
Comparative analyses of RNAs using Agilent RNA 6000 Nano Assay and agarose gel electrophoresis
2003
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
RNA editing of hepatitis B virus transcripts by activation-induced cytidine deaminase
2013 StandoutNobel
Accumulation of unstable promoter-associated transcripts upon loss of the nuclear exosome subunit Rrp6p in Saccharomyces cerevisiae
2006
Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks
2009
Detecting Novel Associations in Large Data Sets
2011 StandoutScience
Histone3 lysine4 trimethylation regulated by the facilitates chromatin transcription complex is critical for DNA cleavage in class switch recombination
2010 StandoutNobel
Noncoding Transcription at Enhancers: General Principles and Functional Models
2012
Pervasive transcription constitutes a new level of eukaryotic genome regulation
2009
Cap-Independent Translation Is Required for Starvation-Induced Differentiation in Yeast
2007 StandoutScienceNobel
Works of Frédéric Devaux being referenced
Statistical inference of the time-varying structure of gene-regulation networks
2010
Transcriptional Regulation by Lge1p Requires a Function Independent of Its Role in Histone H2B Ubiquitination
2004
Structure and properties of transcriptional networks driving selenite stress response in yeasts
2008
Microarray detection of novel nuclear RNA substrates for the exosome
2006
Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization
2008
Cryptic Pol II Transcripts Are Degraded by a Nuclear Quality Control Pathway Involving a New Poly(A) Polymerase
2005
THO/Sub2p Functions to Coordinate 3′-End Processing with Gene-Nuclear Pore Association
2008
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
2005
An artificial transcription activator mimics the genome‐wide properties of the yeast Pdr1 transcription factor
2001
Genome‐wide analysis of mRNAs targeted to yeast mitochondria
2002
New Insights into the Pleiotropic Drug Resistance Network from Genome-Wide Characterization of the YRR1 Transcription Factor Regulation System
2002
Ammonia Pulses and Metabolic Oscillations Guide Yeast Colony Development
2002