Citation Impact
Citing Papers
An enumerative algorithm for de novo design of proteins with diverse pocket structures
2020 StandoutNobel
Global analysis of protein folding using massively parallel design, synthesis, and testing
2017 StandoutScienceNobel
Atomic-Level Characterization of the Structural Dynamics of Proteins
2010 StandoutScienceNobel
Voltage sensor conformations in the open and closed states in rosetta structural models of K + channels
2006 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Computational Thermostabilization of an Enzyme
2005 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
Identifying the amylome, proteins capable of forming amyloid-like fibrils
2010
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
Soluble expression of proteins correlates with a lack of positively-charged surface
2013
Dynamic personalities of proteins
2007 StandoutNature
Atomic packing and short-to-medium-range order in metallic glasses
2006 StandoutNature
The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection
2007 StandoutNobel
Tandem repeats in proteins: From sequence to structure
2011
Design of an optimal Chebyshev‐expanded discrimination function for globular proteins
2002 StandoutNobel
RepeatsDB: a database of tandem repeat protein structures
2013
De novo protein design. I. in search of stability and specificity
1999 StandoutNobel
Automated design of specificity in molecular recognition
2002
Multipass membrane protein structure prediction using Rosetta
2005 StandoutNobel
Amyloid-based nanosensors and nanodevices
2014
Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
2012 StandoutNobel
Topological and energetic factors: what determines the structural details of the transition state ensemble and “en-route” intermediates for protein folding? an investigation for small globular proteins
2000
A structural alphabet for local protein structures: Improved prediction methods
2005
Computational protein design
1999
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Secondary structure determines protein topology
2006
Energy estimation in protein design
2002
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
A Periodic Table of Coiled-Coil Protein Structures
2008
A backbone-centred energy function of neural networks for protein design
2022 Nature
Protein folding and misfolding
2003 StandoutNature
Origin of the designability of protein structures
1999
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
Prediction of amino acid sequence from structure
2000
Three key residues form a critical contact network in a protein folding transition state
2001 Nature
Structure-based design of non-natural amino-acid inhibitors of amyloid fibril formation
2011 StandoutNatureNobel
A surprising simplicity to protein folding
2000 StandoutNatureNobel
De novo protein design: how do we expand into the universe of possible protein structures?
2015
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
Glassy Transition in a Disordered Model for the RNA Secondary Structure
2000 StandoutNobel
Controlling protein assembly on inorganic crystals through designed protein interfaces
2019 StandoutNatureNobel
Solvation Effects and Driving Forces for Protein Thermodynamic and Kinetic Cooperativity: How Adequate is Native-centric Topological Modeling?
2003
Small Libraries of Protein Fragments Model Native Protein Structures Accurately
2002 StandoutNobel
Exploitation of binding energy for catalysis and design
2009 StandoutNatureNobel
Toward high-resolution prediction and design of transmembrane helical protein structures
2007 StandoutNobel
Protein Folding Thermodynamics and Dynamics: Where Physics, Chemistry, and Biology Meet
2006
The Unexpected Importance of the Primary Structure of the Hydrophobic Part of One-Component Ionizable Amphiphilic Janus Dendrimers in Targeted mRNA Delivery Activity
2022 StandoutNobel
Design and STM Investigation of Intramolecular Folding in Self-Assembled Monolayers on the Surface
2004 StandoutNobel
Computer Simulation of Liquids
2017 Standout
Computational method to reduce the search space for directed protein evolution
2001 StandoutNobel
Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse
2002
Effective energy function for proteins in lipid membranes
2003
Extracting knowledge-based energy functions from protein structures by error rate minimization: Comparison of methods using lattice model
2000 StandoutNobel
Structure-Based Design of Functional Amyloid Materials
2014 StandoutNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Catalytic Asymmetric Hydroalkoxylation of C–C Multiple Bonds
2021 StandoutNobel
Funnel sculpting for in silico assembly of secondary structure elements of proteins
2003 StandoutNobel
Determination of optimal Chebyshev-expanded hydrophobic discrimination function for globular proteins
2001 StandoutNobel
Improved recognition of native-like protein structures using a family of designed sequences
2002 StandoutNobel
Native protein sequences are close to optimal for their structures
2000 StandoutNobel
Artificial Molecular Machines
2000 StandoutNobel
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
2003 StandoutScienceNobel
Pagnani, Parisi, and Ricci-Tersenghi Reply:
2001 StandoutNobel
De novo design of small beta barrel proteins
2023 StandoutNobel
Canonical sampling through velocity rescaling
2007 Standout
Statistical Mechanics of the Combinatorial Synthesis and Analysis of Folding Macromolecules
1997
Prediction of membrane protein structures with complex topologies using limited constraints
2009 StandoutNobel
Quantum Mechanical Continuum Solvation Models
2005 Standout
Protein topology and stability define the space of allowed sequences
2002 StandoutNobel
Fast Parallel Algorithms for Short-Range Molecular Dynamics
1995 Standout
Computational Design of Stable and Soluble Biocatalysts
2018
Energy Functions in De Novo Protein Design: Current Challenges and Future Prospects
2013
The Protein Folding Problem
2008
Designing Protein Energy Landscapes
2001
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Structural basis for gating charge movement in the voltage sensor of a sodium channel
2011 StandoutNobel
Nonnative Interactions in the FF Domain Folding Pathway from an Atomic Resolution Structure of a Sparsely Populated Intermediate: An NMR Relaxation Dispersion Study
2011 StandoutNobel
A smooth particle mesh Ewald method
1995 Standout
Works of Flavio Seno being referenced
Interaction potentials for protein folding
1998
The PASTA server for protein aggregation prediction
2007
Exploring the Universe of Protein Structures beyond the Protein Data Bank
2010
Insight into the Structure of Amyloid Fibrils from the Analysis of Globular Proteins
2006
PASTA 2.0: an improved server for protein aggregation prediction
2014
Optimal potentials for predicting inter‐helical packing in transmembrane proteins
2002
A Self-Consistent Knowledge-Based Approach to Protein Design
2001
Recurrent oligomers in proteins: An optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies
2000
An Efficient Algorithm to Perform Local Concerted Movements of a Chain Molecule
2015
Protein Design in a Lattice Model of Hydrophobic and Polar Amino Acids
1998
Variational Approach to Protein Design and Extraction of Interaction Potentials
1998
Design of proteins with hydrophobic and polar amino acids
1998
Strategies for protein folding and design
1999
Optimal Protein Design Procedure
1996
Steric Constraints in Model Proteins
1998
Determination of interaction potentials of amino acids from native protein structures: Tests on simple lattice models
1999
Geometry and symmetry presculpt the free-energy landscape of proteins
2004
Protein Structures and Optimal Folding from a Geometrical Variational Principle
1999
Structure-based design of model proteins
1998
REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform
2009
Deciphering the folding kinetics of transmembrane helical proteins
2000