Standout Papers

deepTools2: a next generation web server for deep-... 2007 2026 2013 2019 4.2k
  1. deepTools2: a next generation web server for deep-sequencing data analysis (2016)
    Fidel Ramírez, Devon Ryan et al. Nucleic Acids Research
  2. deepTools: a flexible platform for exploring deep-sequencing data (2014)
    Fidel Ramírez, Friederike Dündar et al. Nucleic Acids Research
  3. Computing topological parameters of biological networks (2007)
    Yassen Assenov, Fidel Ramírez et al. Bioinformatics
  4. GOATOOLS: A Python library for Gene Ontology analyses (2018)
    Liangsheng Zhang, Brent S. Pedersen et al. Scientific Reports
  5. High-resolution TADs reveal DNA sequences underlying genome organization in flies (2018)
    Fidel Ramírez, Vivek Bhardwaj et al. Nature Communications

Immediate Impact

7 by Nobel laureates 33 from Science/Nature 50 standout
Sub-graph 1 of 23

Citing Papers

Bacterial immunotherapy leveraging IL-10R hysteresis for both phagocytosis evasion and tumor immunity revitalization
2025 Standout
An atlas of transcription initiation reveals regulatory principles of gene and transposable element expression in early mammalian development
2025 Standout
7 intermediate papers

Works of Fidel Ramírez being referenced

deepTools2: a next generation web server for deep-sequencing data analysis
2016 Standout
Suv39h-Dependent H3K9me3 Marks Intact Retrotransposons and Silences LINE Elements in Mouse Embryonic Stem Cells
2014
and 1 more

Author Peers

Author Last Decade Papers Cites
Fidel Ramírez 7953 901 2157 1177 32 10.0k
Nicolas Bray 5661 890 1434 1158 16 8.5k
Joseph M. Paggi 5172 736 2363 1026 16 8.4k
Brad Chapman 6510 460 2567 1683 44 9.1k
Peter J. Sabo 8381 873 1939 2055 37 10.0k
Páll Melsted 5491 938 1525 1205 31 9.0k
Chanhee Park 4577 827 2392 1022 76 8.1k
Rob Patro 5392 991 1348 857 57 8.6k
Alan M. Zahler 9535 667 1050 2065 41 11.4k
Fran Supek 4348 470 1192 1166 56 7.1k
Yijun Ruan 6327 602 1688 1248 106 8.8k

All Works

Loading papers...

Rankless by CCL
2026