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Citing Papers

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
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Expanded therapeutic potential in activity space of next-generation 5-nitroimidazole antimicrobials with broad structural diversity
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Chimeric spike mRNA vaccines protect against Sarbecovirus challenge in mice
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Inducible Foxp3 + regulatory T-cell development by a commensal bacterium of the intestinal microbiota
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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
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Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species
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Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
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Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
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Mycobacterium avium subspecies paratuberculosis is a cause of Crohn's disease
2001
Human Intestinal Epithelial Cells Are Broadly Unresponsive to Toll-Like Receptor 2-Dependent Bacterial Ligands: Implications for Host-Microbial Interactions in the Gut
2003
Oral diseases: a global public health challenge
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Analysis of antimicrobial susceptibility and virulence factors in Helicobacter pyloriclinical isolates
2003
A core gut microbiome in obese and lean twins
2008 StandoutNature
Characterization of the genes rdxA and frxA involved in metronidazole resistance in Helicobacter pylori
2003
Lansoprazole for the Prevention of Recurrences of Ulcer Complications from Long-Term Low-Dose Aspirin Use
2002 Standout
Inflammation and cancer
2002 StandoutNature
Emergence of Clarithromycin‐Resistant Helicobacter pylori (CRHP) with a High Prevalence in Children Compared with Their Parents
2002
Specificity pockets for the side chains of peptide antigens in HLA-Aw68
1989 Nature
Ulcerative Colitis
2011 Standout
Helicobacter pylori infection triggers aberrant expression of activation-induced cytidine deaminase in gastric epithelium
2007 StandoutNobel
The basics about nitric oxide
2005
Detection of Helicobacter pylori DNA in Feces and Saliva by Polymerase Chain Reaction: a Review
2004
Influence of Immunogenicity on the Long-Term Efficacy of Infliximab in Crohn's Disease
2003 Standout
Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine
2004
Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus
2003 StandoutNature
Inflammatory bowel disease: clinical aspects and established and evolving therapies
2007 Standout
Crohn's disease
2012 Standout
A clustering of rna recombination sites adjacent to a hypervariable region of the peplomer gene of murine coronavirus
1990
Quasispecies Development ofHelicobacter pyloriObserved in Paired Isolates Obtained Years Apart from the Same Host
2000
Helicobacter Pylori: Epidemiology and Routes of Transmission
2000
Is Crohn's disease caused by a mycobacterium? Comparisons with leprosy, tuberculosis, and Johne's disease
2003
Analysis of metronidazole, clarithromycin and tetracycline resistance of Helicobacter pylori isolates from Korea
2001
IMMUNOLOGY OF HELICOBACTER PYLORI AND PROSPECTS FOR VACCINE
2000
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
2009 StandoutNature
Inflammatory bowel disease: cause and immunobiology
2007 Standout
Inflammatory Bowel Disease
2009 Standout
Human immune response towards recombinant Helicobacter pylori urease and cellular fractions
2005
Comparison of the T Cell Patterns in Leprous and Cutaneous Sarcoid Granulomas
2000
Protective Anti‐HelicobacterImmunity Is Induced with Aluminum Hydroxide or Complete Freund's Adjuvant by Systemic Immunization
2001
The NOX Family of ROS-Generating NADPH Oxidases: Physiology and Pathophysiology
2007 Standout
Role of the Microbiota in Immunity and Inflammation
2014 Standout
Mechanism of tetracycline resistance by ribosomal protection protein Tet(O)
2013 StandoutNobel
Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
1993 StandoutNature
Inflammatory Bowel Disease
1991 Standout
Spontaneous inflammatory disease in transgenic rats expressing HLA-B27 and human β2m: An animal model of HLA-B27-associated human disorders
1990
Is the molecular basis of metronidazole resistance in microaerophilic organisms understood?
2002
Periodontal Disease and Atherosclerotic Vascular Disease: Does the Evidence Support an Independent Association?
2012
Reduced colonization of gastric mucosa by Helicobacter pylori in mice deficient in interleukin‐101
2001
Primary resistance to antibiotics and its clinical impact on the efficacy of Helicobacter pylori lansoprazole‐based triple therapies
2002
Impact of Helicobacter pylori resistance to clarithromycin on the efficacy of the omeprazole–amoxicillin–clarithromycin therapy
2001
Culture of Mycobacterium avium subspecies paratuberculosis from the blood of patients with Crohn's disease
2004
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
1991 StandoutNature
Host Response and Vaccine Development to Helicobacter pylori Infection
1999
Mutations in Helicobacter pylori rdxA gene sequences may not contribute to metronidazole resistance
2003
Crohn's disease
2016 Standout
Is antimicrobial susceptibility testing necessary before second‐line treatment for Helicobacter pylori infection?
2003
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Low‐dose furazolidone in triple and quadruple regimens for Helicobacter pylori eradication
2003
Isolation of Helicobacter pylori From Sheep—Implications for Transmission to Humans
2001
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
2016 Standout
Immune Responses to Intestinal Microbes in Inflammatory Bowel Diseases
2015
Selected loss of tolerance evidenced by Crohn's disease–associated immune responses to auto- and microbial antigens
2002
Ulcerative colitis
2016 Standout
Pharmacokinetic Considerations in the Treatment of Inflammatory Bowel Disease
2001
Two-Year Combination Antibiotic Therapy With Clarithromycin, Rifabutin, and Clofazimine for Crohn’s Disease
2007
H pylori antibiotic resistance: prevalence, importance, and advances in testing
2004 Standout
Helicobacter pyloriInfection
2002 Standout
Coronavirus Pathogenesis
2011
Genetics and pathogenesis of inflammatory bowel disease
2011 StandoutNature
A microbial symbiosis factor prevents intestinal inflammatory disease
2008 StandoutNature
Lack of Support for a Common Etiology in Johneʼs Disease of Animals and Crohnʼs Disease in Humans
1999
Does Mycobacterium avium subspecies paratuberculosis cause Crohn’s disease?: Table 1
2005
Analysis of iceA1 transcription in Helicobacter pylori
2000
Inflammatory Cytokine mRNA Expression during Early and PersistentHelicobacter pyloriInfection in Nonhuman Primates
2000
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
Expression of Interleukin‐18, a Th1 Cytokine, in Human Gastric Mucosa Is Increased inHelicobacter pyloriInfection
2001
Sarcoidosis
2007 Standout
Molecular testing for antibiotic resistance in Helicobacter pylori
2002
Eradication of Helicobacter pylori and Resolution of Gastritis in the Gastric Mucosa of IL‐10‐Deficient Mice
2005
Duodenal Helicobacter pylori infection differs in cagA genotype between asymptomatic subjects and patients with duodenal ulcers
1999
Development and Maintenance of Regulatory T cells
2013 StandoutNobel
A Common Mechanism of Cellular Death Induced by Bactericidal Antibiotics
2007 Standout
Rapid and specific detection of Helicobacter pylori macrolide resistance in gastric tissue by fluorescent in situ hybridisation
2000
The Relationship Between Consumption of Antimicrobial Agents and the Prevalence of Primary Helicobacter pylori Resistance
2002
Production of the RdxA protein in metronidazole-susceptible and -resistant isolates of Helicobacter pylori cultured from treated mice
2002
Cytokine gene polymorphisms influence mucosal cytokine expression, gastric inflammation, and host specific colonisation during Helicobacter pylori infection
2004
Pyruvate:ferredoxin oxidoreductase and thioredoxin reductase are involved in 5-nitroimidazole activation while flavin metabolism is linked to 5-nitroimidazole resistance in Giardia lamblia
2011
Therapeutic intragastric vaccination against Helicobacter pylori in mice eradicates an otherwise chronic infection and confers protection against reinfection
1997
Quantitative Analysis of Mycobacterial and Propionibacterial DNA in Lymph Nodes of Japanese and European Patients with Sarcoidosis
2002
Host-Bacterial Mutualism in the Human Intestine
2005 StandoutScience
One-Step, Nanoparticle-Mediated Bacterial Detection with Magnetic Relaxation
2006
Effects of 16S rRNA Gene Mutations on Tetracycline Resistance in Helicobacter pylori
2003
Roles of FrxA and RdxA Nitroreductases of Helicobacter pylori in Susceptibility and Resistance to Metronidazole
2001
On the etiology of Crohn disease.
1996
Systemic Th1 Immunization of Mice againstHelicobacter pyloriInfection with CpG Oligodeoxynucleotides as Adjuvants Does Not Protect from Infection but Enhances Gastritis
2004
Antimicrobial Susceptibility and Resistance Patterns among Helicobacter pylori Strains from The Gambia, West Africa
2012
Structure of SARS Coronavirus Spike Receptor-Binding Domain Complexed with Receptor
2005 StandoutScience
High-Level β-Lactam Resistance Associated with Acquired Multidrug Resistance in Helicobacter pylori
2003
Bacterial Resistance to β-Lactam Antibiotics:  Compelling Opportunism, Compelling Opportunity
2005 Standout
Sampling the Antibiotic Resistome
2006 StandoutScience
Immunomagnetic separation and PCR for detection of Helicobacter pylori in water and stool specimens
1995
Localization of neutralizing epitopes and the receptor-binding site within the amino-terminal 330 amino acids of the murine coronavirus spike protein
1994
Nod2-Dependent Regulation of Innate and Adaptive Immunity in the Intestinal Tract
2005 StandoutScience
Pathogenesis ofHelicobacter pyloriInfection
2006 Standout
Johne's Disease, Inflammatory Bowel Disease, andMycobacterium paratuberculosis
2004
Modulation of Innate Cytokine Responses by Products ofHelicobacter pylori
2000
A M r 34,000 proinflammatory outer membrane protein ( oipA ) of Helicobacter pylori
2000
Emergence of Tetracycline Resistance in Helicobacter pylori : Multiple Mutational Changes in 16S Ribosomal DNA and Other Genetic Loci
2002
Emergence of DiverseHelicobacterSpecies in the Pathogenesis of Gastric and Enterohepatic Diseases
2001
Mutations in the 16S rRNA Genes ofHelicobacter pyloriMediate Resistance to Tetracycline
2002
Tetracycline Antibiotics: Mode of Action, Applications, Molecular Biology, and Epidemiology of Bacterial Resistance
2001 Standout
Helicobacter pylori Infection in Rural China: Exposure to Domestic Animals During Childhood and Adulthood
2001
Isolation and Genotyping of Helicobacter pylori from Untreated Municipal Wastewater
2002
Isolation of Helicobacter pylori from saliva
1993
Helicobacter pylori-Induced Mucosal Inflammation Is Th1 Mediated and Exacerbated in IL-4, But Not IFN-γ, Gene-Deficient Mice
2000
Helicobacter pylori Virulence and Genetic Geography
1999 StandoutScience
A Novel Coronavirus from Patients with Pneumonia in China, 2019
2020 Standout
Magnetic Nanoparticles: Design and Characterization, Toxicity and Biocompatibility, Pharmaceutical and Biomedical Applications
2012 Standout
Human Dendritic Cells Respond to Helicobacter pylori, Promoting NK Cell and Th1-Effector Responses In Vitro
2004
TheHelicobacter pyloriplasticity region locusjhp0947âjhp0949is associated with duodenal ulcer disease and interleukin-12 production in monocyte cells
2004
16S rRNA Mutation-Mediated Tetracycline Resistance in Helicobacter pylori
2002
IFN-γ– and IL-10–expressing virus epitope-specific Foxp3+ T reg cells in the central nervous system during encephalomyelitis
2011
Helicobacter felisInfection Is Associated with Lymphoid Follicular Hyperplasia and Mild Gastritis but Normal Gastric Secretory Function in Cats
2000
Long-Term Infection of Mongolian Gerbils withHelicobacter pylori:Microbiological, Histopathological, and Serological Analyses
2005
An evaluation of invasive and non‐invasive tests for the diagnosis of Helicobacter pylori infection in Chinese
2001
Long-Term Follow-Up of Gastric MALT Lymphoma After Helicobacter Pylori Eradication
2005
Differentiation of Metronidazole-Sensitive and -Resistant Clinical Isolates of Helicobacter pylori by Immunoblotting with Antisera to the RdxA Protein
2001
The role ofHelicobacter pylorivirulence factors in interleukin production by monocytic cells
2001
Risk Factors for Helicobacter pylori Resistance in the United States: The Surveillance of H. pylori Antimicrobial Resistance Partnership (SHARP) Study, 1993–1999
2002

Works of F A el-Zaatari being referenced

Polymerase chain reaction detection of Mycobacterium paratuberculosis and Mycobacterium avium subsp silvaticum in long term cultures from Crohn's disease and control tissues.
1992
Seroreactivities Against Saccharomyces cerevisiae and Mycobacterium avium subsp. paratuberculosis p35 and p36 Antigens in Crohn's Disease Patients
2002
Detection ofHelicobacter pyloriin Paraffin-Embedded Gastric Biopsy Specimens byIn SituHybridization
1996
Detection of Mycobacterium avium Subspecies paratuberculosis in Crohn's Diseased Tissues by In Situ Hybridization
2001
REVIEW: Antibacterial Therapy for Crohn's Disease: A Review Emphasizing Therapy Directed Against Mycobacteria
2000
Demonstration of Unexpected Antibiotic Resistance of Genotypically IdenticalHelicobacter pyloriIsolates
1998
In vitro mutagenesis of HLA-B27. Substitution of an unpaired cysteine residue in the alpha 1 domain causes loss of antibody-defined epitopes.
1988
In situ identification of mycobacteria in Crohn's disease patient tissue using confocal scanning laser microscopy
2002
Quantitative RT-PCR analysis of multiple genes encoding putative metronidazole nitroreductases from Helicobacter pylori
2000
Identification of cell wall deficient forms of M. avium subsp. paratuberculosis in paraffin embedded tissues from animals with Johne’s disease by in situ hybridization
2000
Etiology of Crohn's disease: the role of Mycobacterium avium paratuberculosis
2001
Review Article: Uses and Cautions for Use of Polymerase Chain Reaction for Detection of Helicobacter pylori
1997
Invasive Helicobacter‐Like Organisms in Feline Gastric Mucosa
1997
Identification and characterization ofMycobacterium paratuberculosis recombinant proteins expressed inE. coli
1994
Expression of mRNA for Interferon-Gamma, Interleukin-10, and Interleukin-12 (p40) in Normal Gastric Mucosa and in Mucosa Infected withHelicobacter pylori
1997
Determination ofHelicobacter pylori status by reverse transcription-polymerase chain reaction
1995
REP-PCR Fragments as Biomarkers for Differentiating Gastroduodenal Disease-Specific Helicobacter pylori Strains
1998
Frame-shift mutations in NAD(P)H flavin oxidoreductase encoding gene (frxA) from metronidazole resistantHelicobacter pyloriATCC43504 and its involvement in metronidazole resistance
2000
Failure to isolate Helicobacter pylori from stray cats indicates that H. pylori in cats may be an anthroponosis - an animal infection with a human pathogen
1997
Detection of Helicobacter pylori in dental plaque by reverse transcription-polymerase chain reaction
1993
DNA Sequence Analysis of rdxA and frxA from 12 Pairs of Metronidazole-Sensitive and -Resistant Clinical Helicobacter pylori Isolates
2001
Regional Differences in Metronidazole Resistance and Increasing Clarithromycin Resistance among Helicobacter pylori Isolates from Japan
2000
Analysis of rdxA and Involvement of Additional Genes Encoding NAD(P)H Flavin Oxidoreductase (FrxA) and Ferredoxin-Like Protein (FdxB) in Metronidazole Resistance of Helicobacter pylori
2000
Nucleotide sequence analysis and seroreactivities of the 65K heat shock protein from Mycobacterium paratuberculosis
1995
Characterization of IS900 loci in Mycobacterium avium subsp. paratuberculosis and development of multiplex PCR typing The GenBank accession numbers for the sequences reported in this paper are AJ011838, AJ250015–AJ250023 and AJ251434–AJ251437.
2000
The interaction of pH, bile, and Helicobacter pylori may explain duodenal ulcer.
1996
Identification of Mycobacterium avium complex in sarcoidosis
1996
Differential stimulation of interleukin-12 (IL-12) and IL-10 by live and killed Helicobacter pylori in vitro and association of IL-12 production with gamma interferon-producing T cells in the human gastric mucosa
1997
Pathogenicity of antigenic variants of murine coronavirus JHM selected with monoclonal antibodies
1986
Reverse transcription and polymerase chain reaction amplification of rRNA for detection of Helicobacter species
1992
Furazolidone- and Nitrofurantoin-Resistant Helicobacter pylori : Prevalence and Role of Genes Involved in Metronidazole Resistance
2001
In vitro mutagenesis of HLA-B27. Amino acid substitutions at position 67 disrupt anti-B27 monoclonal antibody binding in direct relation to the size of the substituted side chain.
1990
Isolation and Characterization of Tetracycline-Resistant Clinical Isolates of Helicobacter pylori
2000
Characterization of a specific Mycobacterium paratuberculosis recombinant clone expressing 35,000-molecular-weight antigen and reactivity with sera from animals with clinical and subclinical Johne's disease
1997
The differential diagnosis of early gastric mucosa-associated lymphoma: polymerase chain reaction and paraffin section immunophenotyping.
1999
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