Citation Impact
Citing Papers
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database
2021 Standout
Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria
2016 Science
Challenges in the Treatment of Chronic Wounds
2015 Standout
Zero‐shot mutation effect prediction on protein stability and function using RoseTTAFold
2023 StandoutNobel
The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans
2019 StandoutNobel
De novo transcriptome assembly reveals high transcriptional complexity in Pisum sativum axillary buds and shows rapid changes in expression of diurnally regulated genes
2017
Critical contribution of 3′ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA
2022 StandoutNobel
Improved metagenomic analysis with Kraken 2
2019 Standout
Genome-wide discovery of structured noncoding RNAs in bacteria
2019
Virulence Characteristics and an Action Mode of Antibiotic Resistance in Multidrug-Resistant Pseudomonas aeruginosa
2019
COOLAIR Antisense RNAs Form Evolutionarily Conserved Elaborate Secondary Structures
2016
RNA secondary structure prediction using deep learning with thermodynamic integration
2021
A bacterial pathogen induces developmental slowing by high reactive oxygen species and mitochondrial dysfunction in Caenorhabditis elegans
2023 StandoutNobel
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
An evaluation of the accuracy and speed of metagenome analysis tools
2016
Regulation of microRNA function in animals
2018 Standout
The Role of Macrophages in Acute and Chronic Wound Healing and Interventions to Promote Pro-wound Healing Phenotypes
2018 Standout
Pseudomonas aeruginosa cleaves the decoding center of Caenorhabditis elegans ribosomes
2020 StandoutNobel
Towards a balanced view of the bacterial tree of life
2017
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
A footprint of desiccation tolerance in the genome of Xerophyta viscosa
2017
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
2017 Standout
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
2017
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
The EBI search engine: EBI search as a service—making biological data accessible for all
2017
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome
2020
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Applications of contact predictions to structural biology
2017 StandoutNobel
The European Bioinformatics Institute in 2016: Data growth and integration
2015
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy
2017
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein
2020 Standout
Antibiotic resistance in the environment
2021 Standout
Mutation effects predicted from sequence co-variation
2017
Ovine forestomach matrix biomaterial is a broad spectrum inhibitor of matrix metalloproteinases and neutrophil elastase
2012
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
2017
NCBI prokaryotic genome annotation pipeline
2016 Standout
WormBase ParaSite − a comprehensive resource for helminth genomics
2016
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
2022 StandoutNobel
Accurate prediction of protein–nucleic acid complexes using RoseTTAFoldNA
2023 StandoutNobel
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Multidrug efflux pumps: structure, function and regulation
2018 Standout
CADD: predicting the deleteriousness of variants throughout the human genome
2018 Standout
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation
2017
Characterization of a transcriptional TPP riboswitch in the human pathogen Neisseria meningitidis
2020 StandoutNobel
The Pfam protein families database in 2019
2018 Standout
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
2018 Standout
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
Hierarchical structure of collagen composite systems: lessons from biology
1991
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
Bacterial Antibiotic Resistance: The Most Critical Pathogens
2021 Standout
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
2019 Standout
Wound Healing: A Cellular Perspective
2018 Standout
Bone structure and formation: A new perspective
2007 Standout
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
2018 Standout
ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences
2017
HMMER web server: 2018 update
2018 Standout
Nature’s hierarchical materials
2007 Standout
The role of skin substitutes in the management of chronic cutaneous wounds
2013
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO 2 concentrations
2016
Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis
2017
Riboswitch Scanner: an efficient pHMM-based web-server to detect riboswitches in genomic sequences
2015
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
2020
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis
2016
Works of Evan Floden being referenced
Rfam 12.0: updates to the RNA families database
2014
A functional extracellular matrix biomaterial derived from ovine forestomach
2010
Quantification of in vitro and in vivo angiogenesis stimulated by ovine forestomach matrix biomaterial
2011