Citation Impact
Citing Papers
Optimal Dissociation Methods Differ for N - and O -Glycopeptides
2020 StandoutNobel
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
2010 Standout
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
2009 Standout
Tools for Label-free Peptide Quantification
2012
Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'
2009
Honokiol blocks and reverses cardiac hypertrophy in mice by activating mitochondrial Sirt3
2015 Standout
The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
2013
xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data
2013
Highly sensitive feature detection for high resolution LC/MS
2008
Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
2009
Extensive identification and analysis of conserved small ORFs in animals
2015
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
2010 Standout
Cell type-selective secretome profiling in vivo
2020 StandoutNobel
Navigating freely-available software tools for metabolomics analysis
2017
The re-emergence of natural products for drug discovery in the genomics era
2015 Standout
Efficient mining of myxobacterial metabolite profiles enabled by liquid chromatography–electrospray ionisation-time-of-flight mass spectrometry and compound-based principal component analysis
2008
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
2016
Defining the proteolytic landscape during enterovirus infection
2020 StandoutNobel
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments
2007
MassChroQ: A versatile tool for mass spectrometry quantification
2011
Analytical and statistical approaches to metabolomics research
2009
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics
2008
Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present
2012
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics
2016 Standout
multiplierz: an extensible API based desktop environment for proteomics data analysis
2009
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013
2012 Standout
Temporal Proteome and Lipidome Profiles Reveal Hepatitis C Virus-Associated Reprogramming of Hepatocellular Metabolism and Bioenergetics
2010 StandoutNobel
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
2011
A computationally engineered RAS rheostat reveals RAS–ERK signaling dynamics
2016 StandoutNobel
Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
2011 Standout
Methods, algorithms and tools in computational proteomics: A practical point of view
2007
A guided tour of the Trans‐Proteomic Pipeline
2010
OpenMS – A platform for reproducible analysis of mass spectrometry data
2017
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
Revealing the human mucinome
2022 StandoutNobel
mzML—a Community Standard for Mass Spectrometry Data
2010
Quantitative Mass Spectrometry Reveals Dynamics of Factor-inhibiting Hypoxia-inducible Factor-catalyzed Hydroxylation
2011 StandoutNobel
jmzML, an open‐source Java API for mzML, the PSI standard for MS data
2010
Metabolomics: the apogee of the omics trilogy
2012 Standout
2016 update of the PRIDE database and its related tools
2015 Standout
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
2015 Standout
Metabolomics: beyond biomarkers and towards mechanisms
2016 Standout
Evolution of dispersive liquid–liquid microextraction method
2009 Standout
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Mapping Yeast N-Glycosites with Isotopically Recoded Glycans
2012 StandoutNobel
A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry–Based Glycoproteomics
2020 StandoutNobel
MS-DIAL: data-independent MS/MS deconvolution for comprehensive metabolome analysis
2015 Standout
Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ
2014 Standout
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
2012
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
2012 Standout
Discovery and resupply of pharmacologically active plant-derived natural products: A review
2015 Standout
Recent developments in public proteomic MS repositories and pipelines
2009
MetaboAnalyst 3.0—making metabolomics more meaningful
2015 Standout
Lysosome-targeting chimaeras for degradation of extracellular proteins
2020 StandoutNatureNobel
A Guide to Mass Spectrometry-Based Quantitative Proteomics
2018
Gasdermin D is an executor of pyroptosis and required for interleukin-1β secretion
2015 Standout
Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
2011 Standout
Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics
2011
Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins
2014
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
2008 Standout
Global metabolic profiling procedures for urine using UPLC–MS
2010 Standout
SuperHirn – a novel tool for high resolution LC‐MS‐based peptide/protein profiling
2007
Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21
2015 StandoutNobel
Preparation of Weak Cation Exchange Monolithic Capillary Column and Its Application for Protein Separation
2009
Computational Metabolomics: A Framework for the Million Metabolome
2016
The Proteios Software Environment: An Extensible Multiuser Platform for Management and Analysis of Proteomics Data
2009
Overview of Extracellular Vesicles, Their Origin, Composition, Purpose, and Methods for Exosome Isolation and Analysis
2019 Standout
Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes
2016 Standout
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data
2018 Standout
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
2021 Standout
Using MetaboAnalyst 3.0 for Comprehensive Metabolomics Data Analysis
2016 Standout
ProteoWizard: open source software for rapid proteomics tools development
2008
An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data
2008
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
2006
High Performance Computational Analysis of Large-scale Proteome Data Sets to Assess Incremental Contribution to Coverage of the Human Genome
2013
Bioinformatics: The Next Frontier of Metabolomics
2014
Proteomics and the Analysis of Proteomic Data: 2013 Overview of Current Protein‐Profiling Technologies
2013
CPFP: a central proteomics facilities pipeline
2010
glyXtoolMS: An Open-Source Pipeline for Semiautomated Analysis of Glycopeptide Mass Spectrometry Data
2018
Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies
2005
mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data
2010
jmzI dentML API : A J ava interface to the mzI dentML standard for peptide and protein identification data
2012
Computation-Guided Rational Design of a Peptide Motif That Reacts with Cyanobenzothiazoles via Internal Cysteine–Lysine Relay
2018 StandoutNobel
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
2018 Standout
Machine Learning in Agriculture: A Review
2018 Standout
Algorithms and design strategies towards automated glycoproteomics analysis
2016
Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics
2015
Impact of Natural Products on Developing New Anti-Cancer Agents
2009 Standout
An Automated Pipeline for High-Throughput Label-Free Quantitative Proteomics
2013
CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets
2011
apLCMS—adaptive processing of high-resolution LC/MS data
2009
Rapid metabolic evolution in human prefrontal cortex
2011 StandoutNobel
Bioinformatics Tools for the Interpretation of Metabolomics Data
2017
Label-Free Comparative Analysis of Proteomics Mixtures Using Chromatographic Alignment of High-Resolution μLC−MS Data
2008
jmzTab: A Java interface to the mzTab data standard
2014
PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface
2015
Issues and Applications in Label-Free Quantitative Mass Spectrometry
2013
How to submit MS proteomics data to ProteomeXchange via the PRIDE database
2014
Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints**
2021 StandoutNobel
Comparative Analysis of Different Label-Free Mass Spectrometry Based Protein Abundance Estimates and Their Correlation with RNA-Seq Gene Expression Data
2012
MetAlign: Interface-Driven, Versatile Metabolomics Tool for Hyphenated Full-Scan Mass Spectrometry Data Preprocessing
2009
Chemical Glycoproteomics
2016 StandoutNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Eva Lange being referenced
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
2008
OpenMS – An open-source software framework for mass spectrometry
2008
TOPP—the OpenMS proteomics pipeline
2007
A geometric approach for the alignment of liquid chromatography—mass spectrometry data
2007
Absolute Myoglobin Quantitation in Serum by Combining Two-Dimensional Liquid Chromatography−Electrospray Ionization Mass Spectrometry and Novel Data Analysis Algorithms
2005
HIGH-ACCURACY PEAK PICKING OF PROTEOMICS DATA USING WAVELET TECHNIQUES
2005