Standout Papers
Citation Impact
Citing Papers
Direct observation of thymine dimer repair in DNA by photolyase
2005 StandoutNobel
Role of Melanopsin in Circadian Responses to Light
2002 Science
Counting Low-Copy Number Proteins in a Single Cell
2007 StandoutScienceNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
CRY, a Drosophila Clock and Light-Regulated Cryptochrome, Is a Major Contributor to Circadian Rhythm Resetting and Photosensitivity
1998 StandoutNobel
The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana
2014
PIF3, a Phytochrome-Interacting Factor Necessary for Normal Photoinduced Signal Transduction, Is a Novel Basic Helix-Loop-Helix Protein
1998
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
Cycling vrille Expression Is Required for a Functional Drosophila Clock
1999 StandoutNobel
GOToolBox: functional analysis of gene datasets based on Gene Ontology
2004
Involvement of Plasma Membrane Redox Activity and Calcium Homeostasis in the UV-B and UV-A/Blue Light Induction of Gene Expression in Arabidopsis
1998
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
2010
Identification of an oncoprotein- and UV-responsive protein kinase that binds and potentiates the c-Jun activation domain.
1993 Standout
The cryb Mutation Identifies Cryptochrome as a Circadian Photoreceptor in Drosophila
1998 StandoutNobel
Iron Coordination Structures of Oxygen Sensor FixL Characterized by Fe K-edge Extended X-ray Absorption Fine Structure and Resonance Raman Spectroscopy
1999
A haemoprotein with kinase activity encoded by the oxygen sensor of Rhizobium meliloti
1991 Nature
MicroRNAs
2004 Standout
Estimation of the available free energy in a LOV2-Jα photoswitch
2008
A new role for cryptochrome in a Drosophila circadian oscillator
2001 StandoutNatureNobel
agriGO: a GO analysis toolkit for the agricultural community
2010 Standout
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
2003 Standout
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
2016 Standout
Crystal Structure and Functional Analysis of the HERG Potassium Channel N Terminus
1998 StandoutNobel
The ubiquitin-proteasome proteolytic pathway
1994 StandoutNobel
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update
2017 Standout
The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl
2010
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
PlnTFDB: updated content and new features of the plant transcription factor database
2009
PlantGDB: a resource for comparative plant genomics
2007
Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum
2015 Nature
De novo design of luciferases using deep learning
2023 StandoutNatureNobel
FNR and its role in oxygen-regulated gene expression inEscherichia coli
1990
Modular structure of Fix J: homology of the transcriptional activator domain with the ‐35 binding domain of sigma factors
1991
HIF-1, O2, and the 3 PHDs
2001 StandoutNobel
A proposed architecture for the central domain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition
1997
Gene Ontology: tool for the unification of biology
2000 Standout
Photomorphogenesis: Light receptor kinases in plants!
1999
Seeing (and Using) the Light: Recent Developments in Bioluminescence Technology
2020
Functional interaction of phytochrome B and cryptochrome 2
2000 Nature
Genes and Mechanisms Related to RNA Interference Regulate Expression of the Small Temporal RNAs that Control C. elegans Developmental Timing
2001 StandoutNobel
Cryptochrome blue-light photoreceptors of Arabidopsis implicated in phototropism
1998 Nature
Photolyase/cryptochrome blue-light photoreceptors use photon energy to repair DNA and reset the circadian clock
2002 StandoutNobel
Plant blue-light receptors
2000
PlantGSEA: a gene set enrichment analysis toolkit for plant community
2013
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
AgBase: a unified resource for functional analysis in agriculture
2006
Salmonella typhi uses CFTR to enter intestinal epithelial cells
1998 StandoutNatureNobel
TreeTFDB: An Integrative Database of the Transcription Factors from Six Economically Important Tree Crops for Functional Predictions and Comparative and Functional Genomics
2013
[24] Analysis of two-component signal transduction systems involved in transcriptional regulation
1996
Dynamics and mechanism of repair of ultraviolet-induced (6–4) photoproduct by photolyase
2010 StandoutNatureNobel
Nuclear localization of the Arabidopsis blue light receptor cryptochrome 2
1999
Emergence of vancomycin tolerance in Streptococcus pneumoniae
1999 StandoutNatureNobel
A Role for the Segment Polarity Gene shaggy/GSK-3 in the Drosophila Circadian Clock
2001 StandoutNobel
Regulation of Arabidopsis cryptochrome 2 by blue-light-dependent phosphorylation
2002 Nature
Structural and functional analyses of activating amino acid substitutions in the receiver domain of NtrC: Evidence for an activating surface
1997
Drosophila Clock Can Generate Ectopic Circadian Clocks
2003 StandoutNobel
Structural conservation in the CheY superfamily
1993
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription
1991
COMMUNICATION MODULES IN BACTERIAL SIGNALING PROTEINS
1992
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
2010
Perspectives on Oxygen Sensing
1999 StandoutNobel
Creating the Gene Ontology Resource: Design and Implementation
2001
A unique circadian-rhythm photoreceptor
2000 StandoutNatureNobel
Phytozome: a comparative platform for green plant genomics
2011 Standout
Protein kinases and phosphatases that act on histidine, lysine, or arginine residues in eukaryotic proteins: A possible regulator of the mitogen-activated protein kinase cascade
1995
Towards revealing the functions of all genes in plants
2013
The FixL protein of Rhizobium meliloti can be separated into a heme-binding oxygen-sensing domain and a functional C-terminal kinase domain.
1992
Roles of the Two Drosophila CRYPTOCHROME Structural Domains in Circadian Photoreception
2004 StandoutScienceNobel
Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily
1998
Cryptochrome: The Second Photoactive Pigment in the Eye and Its Role in Circadian Photoreception
2000 StandoutNobel
Preservation of light signaling to the suprachiasmatic nucleus in vitamin A-deficient mice
2001 StandoutNobel
Is cross regulation by phosphorylation of two-component response regulator proteins important in bacteria?
1992
General involvement of hypoxia-inducible factor 1 in transcriptional response to hypoxia.
1993 StandoutNobel
Tales from the Crypt(ochromes)
2002
Cross talk to the phosphate regulon of Escherichia coli by PhoM protein: PhoM is a histidine protein kinase and catalyzes phosphorylation of PhoB and PhoM-open reading frame 2
1990
Subunit composition and domain structure of the Spo0A sporulation transcription factor of Bacillus subtilis
1994
McsB Is a Protein Arginine Kinase That Phosphorylates and Inhibits the Heat-Shock Regulator CtsR
2009 StandoutScienceNobel
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains
1993
Creating the gene ontology resource: design and implementation.
2001
Arabidopsis thaliana : A Model Plant for Genome Analysis
1998 Science
The prokaryotic enhancer binding protein NTRC has an ATPase activity which is phosphorylation and DNA dependent.
1992
Functional redundancy of cryptochromes and classical photoreceptors for nonvisual ocular photoreception in mice
2000 StandoutNobel
LOVely enzymes – towards engineering light‐controllable biocatalysts
2009
PAS Domains: Internal Sensors of Oxygen, Redox Potential, and Light
1999
The phycobilisome, a light-harvesting complex responsive to environmental conditions
1993
Two-Component Signal Transduction
2000 Standout
Arabidopsis NPH1: A Flavoprotein with the Properties of a Photoreceptor for Phototropism
1998 Science
Reversible Photocontrol of Biological Systems by the Incorporation of Molecular Photoswitches
2013 StandoutNobel
Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanism
1989
Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems
1999
A common switch in activation of the response regulators NtrC and PhoB: phosphorylation induces dimerization of the receiver modules.
1995
Phytochromes and Cryptochromes in the Entrainment of the Arabidopsis Circadian Clock
1998 Science
Characterization of Blue-light and Developmental Regulation of the Photolyase gene phr1 in Trichoderma harzianum
2000
A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity
2006 StandoutNobel
Human DNA Repair Genes
2001 StandoutScienceNobel
Cryptochrome Structure and Signal Transduction
2003
Circadian control of XPA and excision repair of cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase
2010 StandoutNobel
Role of Mouse Cryptochrome Blue-Light Photoreceptor in Circadian Photoresponses
1998 StandoutScienceNobel
Identification of a Streptococcus pneumoniae Gene Locus Encoding Proteins of an ABC Phosphate Transporter and a Two-Component Regulatory System
1999 StandoutNobel
A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1
1998
Functional analysis of an oxygen-regulated transcriptional enhancer lying 3' to the mouse erythropoietin gene.
1991 StandoutNobel
Differential regulation of mammalian Period genes and circadian rhythmicity by cryptochromes 1 and 2
1999 StandoutNobel
A Yeast Protein Similar to Bacterial Two-Component Regulators
1993 Science
LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): Binding sites for the chromophore flavin mononucleotide
1999
Autophosphorylation and phosphatase activities of the oxygen-sensing protein FixL of Rhizobium meliloti are coordinately regulated by oxygen.
1993
SALMONELLOSIS: Host Immune Responses and Bacterial Virulence Determinants1
1996
A chemotactic signaling surface on CheY defined by suppressors of flagellar switch mutations
1992
Structure and Function of DNA Photolyase and Cryptochrome Blue-Light Photoreceptors
2003 StandoutNobel
GENETICS OF THE MAMMALIAN CIRCADIAN SYSTEM: Photic Entrainment, Circadian Pacemaker Mechanisms, and Posttranslational Regulation
2000
Works of Eva Huala being referenced
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
Community-based gene structure annotation
2004
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model
2016
The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
2001
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
2007
Blue-Light Photoreceptors in Higher Plants
1999
The central domain of Rhizobium meliloti NifA is sufficient to activate transcription from the R. meliloti nifH promoter
1989
LEAFY Interacts with Floral Homeotic Genes to Regulate Arabidopsis Floral Development.
1992
The central domain of Rhizobium leguminosarum DctD functions independently to activate transcription
1992
Arabidopsis NPH1: A Protein Kinase with a Putative Redox-Sensing Domain
1997 Science
PROKARYOTIC SIGNAL TRANSDUCTION MEDIATED BY SENSOR AND REGULATOR PROTEIN PAIRS
1989
LEAFY Interacts with Floral Homeotic Genes to Regulate Arabidopsis Floral Development
1992
Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies
2004