Citation Impact
Citing Papers
Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance
2016
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
2021 StandoutNobel
Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
2021 StandoutNobel
Mouse models of acute and chronic hepacivirus infection
2017 StandoutScienceNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
Investigating lensing by absorbers in the 2dF-quasar survey
2003
Protein tertiary structure prediction and refinement using deep learning and Rosetta in CASP14
2021 StandoutNobel
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
ColabFold: making protein folding accessible to all
2022 Standout
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
2017 StandoutNobel
Parasail: SIMD C library for global, semi-global, and local pairwise sequence alignments
2016
CRISPR/Cas9-mediated targeted chromosome elimination
2017
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Clustering huge protein sequence sets in linear time
2018
Fast and accurate protein structure search with Foldseek
2023 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Protein interactions in human pathogens revealed through deep learning
2024 StandoutNobel
Resolving the complexity of the human genome using single-molecule sequencing
2014 Nature
Simultaneous targeting of linked loci in mouse embryos using base editing
2019
Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes
2016
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction
2015
The presence and impact of reference bias on population genomic studies of prehistoric human populations
2019
New insights into the mechanisms of epithelial–mesenchymal transition and implications for cancer
2018 Standout
Cancer stem cells revisited
2017 Standout
mRNA vaccines for infectious diseases: principles, delivery and clinical translation
2021 StandoutNobel
Using ERDS to Infer Copy-Number Variants in High-Coverage Genomes
2012
PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data
2013
Introducing difference recurrence relations for faster semi-global alignment of long sequences
2018
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
Extremely High Mutation Rate of HIV-1 In Vivo
2015
Fast and accurate de novo genome assembly from long uncorrected reads
2017 Standout
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
2012
Revolutionizing healthcare: the role of artificial intelligence in clinical practice
2023 Standout
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes
2015
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
TIGRA: A targeted iterative graph routing assembler for breakpoint assembly
2013
22q11.2 deletion syndrome
2015 Standout
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities
2017 Standout
Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery
2018
Identification of copy number variants in whole-genome data using Reference Coverage Profiles
2015 StandoutNobel
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Systematic benchmark of ancient DNA read mapping
2021
Active Transposition in Genomes
2012
Enriched haloes at redshift z = 2 with no star formation: implications for accretion and wind scenarios★
2011 StandoutNobel
Drug repurposing for viral cancers: A paradigm of machine learning, deep learning, and virtual screening‐based approaches
2023
A Wnt-producing niche drives proliferative potential and progression in lung adenocarcinoma
2017 Nature
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens
2018 Standout
Weak gravitational lensing
2001 Standout
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
MindTheGap: integrated detection and assembly of short and long insertions
2014
A catalogue of absorption-line systems in QSO spectra
2003
A CROSS-CORRELATION ANALYSIS OF Mg II ABSORPTION LINE SYSTEMS AND LUMINOUS RED GALAXIES FROM THE SDSS DR5
2009
Works of Erik Garrison being referenced
Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences
2014
Viral coinfection analysis using a MinHash toolkit
2019
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
2014
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
2013
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
2020
Genome graphs and the evolution of genome inference
2017
SpeedSeq: ultra-fast personal genome analysis and interpretation
2015
A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
2011
An inhomogeneous reference catalogue of identified intervening heavy element systems in spectra of QSOs
1991