Standout Papers
Citation Impact
Citing Papers
Comprehensive computational design of ordered peptide macrocycles
2017 StandoutScienceNobel
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Advances in integrative modeling of biomolecular complexes
2012
Expansive discovery of chemically diverse structured macrocyclic oligoamides
2024 StandoutScienceNobel
Human disease locus discovery and mapping to molecular pathways through phylogenetic profiling
2013 StandoutNobel
Integrative approaches to the prediction of protein functions based on the feature selection
2009
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Ferroptosis: molecular mechanisms and health implications
2020 Standout
Scoring functions for protein–protein interactions
2013 StandoutNobel
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants
2016 Standout
Supramolecular Binding Thermodynamics by Dispersion‐Corrected Density Functional Theory
2012 Standout
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
2020 Standout
A view on drug resistance in cancer
2019 StandoutNature
Monofunctionalized Pillar[5]arene as a Host for Alkanediamines
2011 StandoutNobel
Protein design with fragment databases
2011
A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals
2012 StandoutNobel
On the Clinical Pharmacology of Reactive Oxygen Species
2020
Oxidative stress, dysfunctional glucose metabolism and Alzheimer disease
2019 Standout
Pathway and network-based strategies to translate genetic discoveries into effective therapies
2016
A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information
2017
Structure-based prediction of protein–protein interactions on a genome-wide scale
2012 Nature
Redox-related biomarkers in human cardiovascular disease - classical footprints and beyond
2021
HPIDB 2.0: a curated database for host–pathogen interactions
2016
The ClusPro web server for protein–protein docking
2017 Standout
Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems
2011
AI in health and medicine
2022 Standout
Targeting oxidative stress in disease: promise and limitations of antioxidant therapy
2021 Standout
High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy
2014 StandoutNobel
Large language models in medicine
2023 Standout
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
NRF2 and NF-қB interplay in cerebrovascular and neurodegenerative disorders: Molecular mechanisms and possible therapeutic approaches
2018 Standout
FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity
2021
The Evolving Landscape of Brain Metastasis
2018
Protein-Protein Interactions and Prediction: A Comprehensive Overview
2013
PocketQuery: protein-protein interaction inhibitor starting points from protein-protein interaction structure
2012
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents
2020 Standout
Computational design of self-assembling cyclic protein homo-oligomers
2016 StandoutNobel
Multimodal biomedical AI
2022 Standout
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
Drug repurposing: progress, challenges and recommendations
2018 Standout
Oxidative Stress: A Unifying Paradigm in Hypertension
2020
Halogen bonding and other σ-hole interactions: a perspective
2013 Standout
Binding Mechanisms in Supramolecular Complexes
2009
Versatility and Invariance in the Evolution of Homologous Heteromeric Interfaces
2012
Protein Docking by the Interface Structure Similarity: How Much Structure Is Needed?
2012
Uncovering disease mechanisms through network biology in the era of Next Generation Sequencing
2016
Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology
2022 Standout
On the binding affinity of macromolecular interactions: daring to ask why proteins interact
2012
Comprehensive analysis of loops at protein-protein interfaces for macrocycle design
2014
Recent progress in Keap1-Nrf2 protein-protein interaction inhibitors
2020
On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys
2013
Therapeutic targeting of the NRF2 and KEAP1 partnership in chronic diseases
2019 Standout
Transient protein-protein interactions
2011
Network propagation: a universal amplifier of genetic associations
2017
Transcription factors in ferroptotic cell death
2020
Reactive Oxygen Comes of Age: Mechanism-Based Therapy of Diabetic End-Organ Damage
2019
PhyloGene server for identification and visualization of co-evolving proteins using normalized phylogenetic profiles
2015 StandoutNobel
Nrf2 activation improves experimental rheumatoid arthritis
2023 StandoutNobel
NRF2 and Hypoxia-Inducible Factors: Key Players in the Redox Control of Systemic Iron Homeostasis
2020
Bindungsmechanismen in supramolekularen Komplexen
2009
Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins
2009
Structural Bioinformatics of the Interactome
2014
Mapping of Protein-Protein Interactions: Web-Based Resources for Revealing Interactomes
2018
Complexation of Polyoxometalates with Cyclodextrins
2015 StandoutNobel
Synthesis and solution-state dynamics of donor–acceptor oligorotaxane foldamers
2013 StandoutNobel
CORUM: the comprehensive resource of mammalian protein complexes—2019
2018
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
2017 Standout
Carbohydrate-Mediated Purification of Petrochemicals
2015 StandoutNobel
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
2014 StandoutNobel
Self-assembly–based posttranslational protein oscillators
2020 StandoutNobel
Activators and Inhibitors of NRF2: A Review of Their Potential for Clinical Development
2019
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
2019 Standout
Artificial Molecular Machines
2015 Standout
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
2018 Standout
Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19
2020
KEAP1‐NRF2 protein–protein interaction inhibitors: Design, pharmacological properties and therapeutic potential
2022
Influence of Constitution and Charge on Radical Pairing Interactions in Tris-radical Tricationic Complexes
2016 StandoutNobel
IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species
2018
Predicting Protein–Protein Interactions from the Molecular to the Proteome Level
2016
Ergothioneine – a diet‐derived antioxidant with therapeutic potential
2018
Artificial Intelligence and Business Value: a Literature Review
2021 Standout
A hybrid NMR/SAXS‐based approach for discriminating oligomeric protein interfaces using R osetta
2014 StandoutNobel
Stapled β-Hairpins Featuring 4-Mercaptoproline
2021 StandoutNobel
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
2019 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
Top-down design of protein architectures with reinforcement learning
2023 StandoutScienceNobel
InterProScan 5: genome-scale protein function classification
2014 Standout
Works of Emre Güney being referenced
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare
2020
Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details
2012
HotSprint: database of computational hot spots in protein interfaces
2007
Exploiting Protein-Protein Interaction Networks for Genome-Wide Disease-Gene Prioritization
2012
Tissue Specificity of Human Disease Module
2016
Biana: a software framework for compiling biological interactions and analyzing networks
2010
Network-based in silico drug efficacy screening
2016
Integrating Structure to Protein-Protein Interaction Networks That Drive Metastasis to Brain and Lung in Breast Cancer
2013
Transcription Factor NRF2 as a Therapeutic Target for Chronic Diseases: A Systems Medicine Approach
2018 Standout
Architectures and Functional Coverage of Protein–Protein Interfaces
2008
A diseasome cluster-based drug repurposing of soluble guanylate cyclase activators from smooth muscle relaxation to direct neuroprotection
2018
Extending Signaling Pathways with Protein–Interaction Networks. Application to Apoptosis
2012
Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology
2018
FN14 and GRP94 expression are prognostic/predictive biomarkers of brain metastasis outcome that open up new therapeutic strategies
2015
From single drug targets to synergistic network pharmacology in ischemic stroke
2019