Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
2007 StandoutScience
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Trained immunity: A program of innate immune memory in health and disease
2016 StandoutScience
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
Natural Microbe-Mediated Refractoriness to Plasmodium Infection in Anopheles gambiae
2011 Science
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
The Ensembl Regulatory Build
2015
AutoFACT: An Auto matic F unctional A nnotation and C lassification T ool
2005
Genome analysis of the platypus reveals unique signatures of evolution
2008 Nature
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011 Standout
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
2011 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
The Role of Hemocytes in <b><i>Anopheles gambiae</i></b> Antiplasmodial Immunity
2013
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
2012 Standout
Genome annotation past, present, and future: How to define an ORF at each locus
2005
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
PrimerZ: streamlined primer design for promoters, exons and human SNPs
2007
Ensembl 2005
2004
Primer3—new capabilities and interfaces
2012 Standout
Two Mosquito LRR Proteins Function as Complement Control Factors in the TEP1-Mediated Killing of Plasmodium
2009 StandoutNobel
Pfam: the protein families database
2013 Standout
JIGSAW: integration of multiple sources of evidence for gene prediction
2005
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
2014 Standout
The Human Transcription Factors
2018 Standout
Impaired PIEZO1 function in patients with a novel autosomal recessive congenital lymphatic dysplasia
2015 StandoutNobel
Implication of the Mosquito Midgut Microbiota in the Defense against Malaria Parasites
2009
The molecular ecologist's guide to expressed sequence tags
2006
Continuous exposure to Plasmodium results in decreased susceptibility and transcriptomic divergence of the Anopheles gambiae immune system
2007
The gut microbiota of insects – diversity in structure and function
2013 Standout
Using the Acropora digitifera genome to understand coral responses to environmental change
2011 StandoutNature
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
A Wolbachia Symbiont in Aedes aegypti Limits Infection with Dengue, Chikungunya, and Plasmodium
2009 Standout
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
2010
Detecting the number of clusters of individuals using the software structure : a simulation study
2005 Standout
The Aedes aegypti Toll Pathway Controls Dengue Virus Infection
2008
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
2011 StandoutNature
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
2006
GENCODE: producing a reference annotation for ENCODE
2006
A synthetic homing endonuclease-based gene drive system in the human malaria mosquito
2011 StandoutNatureNobel
Ensembl BioMarts: a hub for data retrieval across taxonomic space
2011 Standout
Native Microbiota Shape Insect Vector Competence for Human Pathogens
2011
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
Transcription factors: from enhancer binding to developmental control
2012 Standout
A Core Complex of BBS Proteins Cooperates with the GTPase Rab8 to Promote Ciliary Membrane Biogenesis
2007 Standout
Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver
2007
miRBase: microRNA sequences, targets and gene nomenclature
2005 Standout
Primate iPS cells as tools for evolutionary analyses
2014 StandoutNobel
Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
2015 StandoutNature
GeneWise and Genomewise
2004 Standout
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
A hitchhiker's guide to expressed sequence tag (EST) analysis
2006
Comparative Genomic Analysis Identifies an ADP-Ribosylation Factor–like Gene as the Cause of Bardet-Biedl Syndrome (BBS3)
2004
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
A beginner's guide to eukaryotic genome annotation
2012
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
2010 Standout
Phytozome: a comparative platform for green plant genomics
2011 Standout
Site-Specific Integration and Expression of an Anti-Malarial Gene in Transgenic Anopheles gambiae Significantly Reduces Plasmodium Infections
2011
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
Treatment of HCV Infection by Targeting MicroRNA
2013 Standout
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Automated generation of heuristics for biological sequence comparison
2005 Standout
SPAS-1 (stimulator of prostatic adenocarcinoma-specific T cells)/SH3GLB2: A prostate tumor antigen identified by CTLA-4 blockade
2008 StandoutNobel
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
2007 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Conservation and divergence of methylation patterning in plants and animals
2010 Standout
The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients
2018 StandoutScience
Dual roles for the ER membrane protein complex in flavivirus infection: viral entry and protein biogenesis
2019
Protein Annotation at Genomic Scale: The Current Status
2007
Constitutive expression of a complement-like protein in Toll and JAK gain-of-function mutants ofDrosophila
2000 StandoutNobel
Optimized design and assessment of whole genome tiling arrays
2007
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
2008
Works of Emmanuel Mongin being referenced
Long-range regulation is a major driving force in maintaining genome integrity
2009
The Ensembl Analysis Pipeline
2004
Anopheles gambiae Immune Responses to Human and Rodent Plasmodium Parasite Species
2006
SNPServer: a real-time SNP discovery tool
2005
The Anopheles gambiae genome: an update
2003
The Ensembl Automatic Gene Annotation System
2004