Citation Impact
Citing Papers
Flow-Dependent Regulation of Krüppel-Like Factor 2 Is Mediated by MicroRNA-92a
2011
Phosphorylation of ULK1 (hATG1) by AMP-Activated Protein Kinase Connects Energy Sensing to Mitophagy
2010 StandoutScience
Derepression of BDNF Transcription Involves Calcium-Dependent Phosphorylation of MeCP2
2003 StandoutScience
Low-grade chronic inflammation in regions of the normal mouse arterial intima predisposed to atherosclerosis
2006
Trained immunity: A program of innate immune memory in health and disease
2016 StandoutScience
2014 AHA/ACC Guideline for the Management of Patients With Valvular Heart Disease
2014 Standout
Gene expression profiling of malignant mesothelioma.
2003
Foxp3 depends on Ikaros for control of regulatory T cell gene expression and function
2024
Consecutive Positive Feedback Loops Create a Bistable Switch that Controls Preadipocyte-to-Adipocyte Conversion
2012
Adipose tissue stem cells meet preadipocyte commitment: going back to the future
2011
Inference and analysis of cell-cell communication using CellChat
2021 Standout
scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles
2020
Impaired glycocalyx barrier properties contribute to enhanced intimal low-density lipoprotein accumulation at the carotid artery bifurcation in mice
2008
The tumor suppressor kinase LKB1: lessons from mouse models
2011
Epigenetic regulation of adipogenesis
2012
Transcriptional networks and chromatin remodeling controlling adipogenesis
2011
Thrombotic risk stratification using computational modeling in patients with coronary artery aneurysms following Kawasaki disease
2014
A PPARγ–FGF1 axis is required for adaptive adipose remodelling and metabolic homeostasis
2012 Nature
Cross-species ChIP-seq studies provide insights into regulatory strategies of PPARγ in adipocytes
2012
Flt3 Signaling-Dependent Dendritic Cells Protect against Atherosclerosis
2011 StandoutNobel
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
2012 Standout
Inflammatory links between obesity and metabolic disease
2011 Standout
PPARs: Fatty acid sensors controlling metabolism
2012
Rewiring of the Fruit Metabolome in Tomato Breeding
2018 Standout
AMPK: guardian of metabolism and mitochondrial homeostasis
2017 Standout
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
2010 Standout
The selection and function of cell type-specific enhancers
2015
Shear Stress Biology of the Endothelium
2005
The emerging role of lncRNAs in cancer
2015 Standout
The Decapping Scavenger Enzyme DCS-1 Controls MicroRNA Levels in Caenorhabditis elegans
2013 StandoutNobel
Macrophages in the Pathogenesis of Atherosclerosis
2011 Standout
Epigenetic codes of PPARγ in metabolic disease
2011
Extensive chromatin remodelling and establishment of transcription factor ‘hotspots’ during early adipogenesis
2011
MicroRNA-mediated mechanisms of the cellular stress response in atherosclerosis
2015
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
Hemodynamically Driven Stent Strut Design
2009
Caenorhabditis elegans Genomic Response to Soil Bacteria Predicts Environment-Specific Genetic Effects on Life History Traits
2009
The changing landscape of atherosclerosis
2021 StandoutNature
Lipid‐sensing nuclear receptors in the pathophysiology and treatment of the metabolic syndrome
2011
Cells on chips
2006 StandoutNature
Lkb1 regulates cell cycle and energy metabolism in haematopoietic stem cells
2010 Nature
Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs
2012
A practical false discovery rate approach to identifying patterns of differential expression in microarray data
2005
Database resources of the National Center for Biotechnology Information: update
2003 Standout
The atherosusceptible endothelium: endothelial phenotypes in complex haemodynamic shear stress regions in vivo
2013
The role of shear stress in the pathogenesis of atherosclerosis
2004
In vivo differences between endothelial transcriptional profiles of coronary and iliac arteries revealed by microarray analysis
2008
Piezos thrive under pressure: mechanically activated ion channels in health and disease
2017 StandoutNobel
Metazoan MicroRNAs
2018 Standout
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
2008 Standout
Monocilia on chicken embryonic endocardium in low shear stress areas
2005
Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers
2012
Disruption of Fnip1 Reveals a Metabolic Checkpoint Controlling B Lymphocyte Development
2012 StandoutNobel
Vascular endothelium, hemodynamics, and the pathobiology of atherosclerosis
2012
Image-based modeling of hemodynamics in coronary artery aneurysms caused by Kawasaki disease
2011
Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription
2013
MicroRNA-101 mediates the suppressive effect of laminar shear stress on mTOR expression in vascular endothelial cells
2012
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
2011 Standout
The atypical mechanosensitive microRNA-712 derived from pre-ribosomal RNA induces endothelial inflammation and atherosclerosis
2013
T Cell Receptor Stimulation-Induced Epigenetic Changes and Foxp3 Expression Are Independent and Complementary Events Required for Treg Cell Development
2012 StandoutNobel
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
2003 Standout
Responsiveness to acidity via metal ion regulators mediates virulence in the gastric pathogen Helicobacter pylori
2004
Molecular basis of the effects of shear stress on vascular endothelial cells
2004
Endothelial Transcriptome Profiles In Vivo in Complex Arterial Flow Fields
2007
Non-coding RNAs in human disease
2011 Standout
HISAT: a fast spliced aligner with low memory requirements
2015 Standout
Endothelial primary cilia in areas of disturbed flow are at the base of atherosclerosis
2007
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Mechanisms of fibrosis: therapeutic translation for fibrotic disease
2012 Standout
PPARγ signaling and metabolism: the good, the bad and the future
2013 Standout
Mechanotransduction in vascular physiology and atherogenesis
2008
What We Talk About When We Talk About Fat
2014 Standout
Shear-sensitive MicroRNA-34a Modulates Flow-dependent Regulation of Endothelial Inflammation
2014
Glypican-1 identifies cancer exosomes and detects early pancreatic cancer
2015 StandoutNature
Hemodynamics influences vascular peroxynitrite formation: Implication for low-density lipoprotein apo-B-100 nitration
2006
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Inflammation, Atherosclerosis, and Coronary Artery Disease
2005 Standout
Coronary endothelium expresses a pathologic gene pattern compared to aortic endothelium: Correlation of asynchronous hemodynamics and pathology in vivo
2006
Metastatic colonization by circulating tumour cells
2016 StandoutNature
Resident intimal dendritic cells and the initiation of atherosclerosis
2010
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Diagnosis, Treatment, and Long-Term Management of Kawasaki Disease: A Scientific Statement for Health Professionals From the American Heart Association
2017 Standout
MicroRNA-126-5p promotes endothelial proliferation and limits atherosclerosis by suppressing Dlk1
2014
STAR NET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data
2009
Development and Maintenance of Regulatory T cells
2013 StandoutNobel
Effect of shear stress on vascular inflammation and plaque development
2007
Advances in Malignant Mesothelioma
2005 Standout
Calcific aortic stenosis
2016
Forming functional fat: a growing understanding of adipocyte differentiation
2011
Endothelial Protein Kinase C Isoform Identity and Differential Activity of PKCζ in an Athero-Susceptible Region of Porcine Aorta
2005
Genome Regulation by Long Noncoding RNAs
2012 Standout
Partial carotid ligation is a model of acutely induced disturbed flow, leading to rapid endothelial dysfunction and atherosclerosis
2009
Epigenetics in the Vascular Endothelium
2015
Activation of Nrf2 in Endothelial Cells Protects Arteries From Exhibiting a Proinflammatory State
2009
Phenotypic Heterogeneity of the Endothelium
2007
Neutrophils, lymphocytes, and monocytes exhibit diverse behaviors in transendothelial and subendothelial migrations under coculture with smooth muscle cells in disturbed flow
2005
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Altered Shear Stress Stimulates Upregulation of Endothelial VCAM-1 and ICAM-1 in a BMP-4– and TGF-β1–Dependent Pathway
2008
Dialogue between E. coli free radical pathways and the mitochondria of C. elegans
2015 StandoutNobel
Key transcriptional regulators of the vasoprotective effects of shear stress
2009
Improved significance test for DNA microarray data: temporal effects of shear stress on endothelial genes
2002
KLF2 Primes the Antioxidant Transcription Factor Nrf2 for Activation in Endothelial Cells
2008
The Role of Endoplasmic Reticulum Stress in the Progression of Atherosclerosis
2010
Phenotypic Heterogeneity of the Endothelium
2007
Lkb1 Deletion Promotes Ectopic Lipid Accumulation in Muscle Progenitor Cells and Mature Muscles
2014
Distinct endothelial phenotypes evoked by arterial waveforms derived from atherosclerosis-susceptible and -resistant regions of human vasculature
2004
Identification of antigen-presenting dendritic cells in mouse aorta and cardiac valves
2009 StandoutNobel
Computational methods for transcriptome annotation and quantification using RNA-seq
2011
Recent insights into the cellular biology of atherosclerosis
2015
Transcriptional Profiles of Valvular and Vascular Endothelial Cells Reveal Phenotypic Differences
2005
Piezo1, a mechanically activated ion channel, is required for vascular development in mice
2014 StandoutNobel
Multiple Hypothesis Testing in Microarray Experiments
2003
Calcific Aortic Valve Disease: Not Simply a Degenerative Process
2011
The MGED Ontology: a resource for semantics-based description of microarray experiments
2006
Species-Specific Strategies Underlying Conserved Functions of Metabolic Transcription Factors
2011
PPARs and Lipid Ligands in Inflammation and Metabolism
2011
Heart valve function: a biomechanical perspective
2007
Shear stress affects the intracellular distribution of eNOS: direct demonstration by a novel in vivo technique
2005
Integrating Heterogeneous High-Throughput Data for Meta-Dimensional Pharmacogenomics and Disease-Related Studies
2012
2020 ACC/AHA Guideline for the Management of Patients With Valvular Heart Disease: A Report of the American College of Cardiology/American Heart Association Joint Committee on Clinical Practice Guidelines
2020 Standout
Hemodynamic Disturbed Flow Induces Differential DNA Methylation of Endothelial Kruppel-Like Factor 4 Promoter In Vitro and In Vivo
2014
Site-Specific MicroRNA-92a Regulation of Krüppel-Like Factors 4 and 2 in Atherosusceptible Endothelium
2012
MicroRNA Regulation of Atherosclerosis
2016
Designing a nano-interface in a microfluidic chip to probe living cells: Challenges and perspectives
2006
Analyzing gene expression data in terms of gene sets: methodological issues
2007
Atheroprotective Signaling Mechanisms Activated by Steady Laminar Flow in Endothelial Cells
2008
Repressor transcription factor 7-like 1 promotes adipogenic competency in precursor cells
2011
Calcific Aortic Valve Stenosis: Methods, Models, and Mechanisms
2011
Prolonged shear stress and KLF2 suppress constitutive proinflammatory transcription through inhibition of ATF2
2007
Regulation of Endothelial Cell Cycle by Laminar Versus Oscillatory Flow
2007
Endothelial Cell Dysfunction and the Pathobiology of Atherosclerosis
2016 Standout
Transcriptional profiling of a mouse model for Rett syndrome reveals subtle transcriptional changes in the brain
2002
Histone Deacetylase 3 Is Critical in Endothelial Survival and Atherosclerosis Development in Response to Disturbed Flow
2009
MicroRNA-23b Regulates Cyclin-Dependent Kinase–Activating Kinase Complex Through Cyclin H Repression to Modulate Endothelial Transcription and Growth Under Flow
2014
Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis
2014
β-Catenin Mediates Mechanically Regulated, Transforming Growth Factor-β1–Induced Myofibroblast Differentiation of Aortic Valve Interstitial Cells
2010
Effects of Disturbed Flow on Vascular Endothelium: Pathophysiological Basis and Clinical Perspectives
2011 Standout
Inhibition of MicroRNA-92a Prevents Endothelial Dysfunction and Atherosclerosis in Mice
2013
Works of Elisabetta Manduchi being referenced
MicroRNA-10a regulation of proinflammatory phenotype in athero-susceptible endothelium in vivo and in vitro
2010
Chronic Endoplasmic Reticulum Stress Activates Unfolded Protein Response in Arterial Endothelium in Regions of Susceptibility to Atherosclerosis
2009
Mapping effector genes at lupus GWAS loci using promoter Capture-C in follicular helper T cells
2020
Arterial endothelial methylome: differential DNA methylation in athero-susceptible disturbed flow regions in vivo
2015
Regional determinants of arterial endothelial phenotype dominate the impact of gender or short-term exposure to a high-fat diet
2005
LKB1 Regulates Pancreatic β Cell Size, Polarity, and Function
2009
Generation of patterns from gene expression data by assigning confidence to differentially expressed genes
2000
Propagation of adipogenic signals through an epigenomic transition state
2010
RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies
2004
Coronary Artery Endothelial Transcriptome In Vivo
2011
Spatial Heterogeneity of Endothelial Phenotypes Correlates With Side-Specific Vulnerability to Calcification in Normal Porcine Aortic Valves
2005
Cell-Specific Determinants of Peroxisome Proliferator-Activated Receptor γ Function in Adipocytes and Macrophages
2010
Analysis and Management of Microarray Gene Expression Data
2007
Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA
2003
Comparison of different labeling methods for two-channel high-density microarray experiments
2002
Coexisting proinflammatory and antioxidative endothelial transcription profiles in a disturbed flow region of the adult porcine aorta
2004