Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
A genomic region associated with protection against severe COVID-19 is inherited from Neandertals
2021 StandoutNobel
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Trained immunity: A program of innate immune memory in health and disease
2016 StandoutScience
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
The Ensembl Regulatory Build
2015
Genome analysis of the platypus reveals unique signatures of evolution
2008 Nature
Modification of messenger RNA by 2′-O-methylation regulates gene expression in vivo
2019
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
TDP-43 Regulates the Microprocessor Complex Activity During In Vitro Neuronal Differentiation
2013
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Genome annotation past, present, and future: How to define an ORF at each locus
2005
Regulation of microRNA biogenesis
2014 Standout
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements
2013
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
2013 StandoutNatureNobel
Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading
2014
Argonaute Proteins: From Structure to Function in Development and Pathological Cell Fate Determination
2020
Evolutionarily Conserved Roles of the Dicer Helicase Domain in Regulating RNA Interference Processing
2014 StandoutNobel
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
2013
JIGSAW: integration of multiple sources of evidence for gene prediction
2005
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
2012
Molecular basis of ancestral vertebrate electroreception
2017 StandoutNatureNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
2012
Epigenetics and Bacterial Infections
2012
Using the Acropora digitifera genome to understand coral responses to environmental change
2011 StandoutNature
Argonaute proteins: functional insights and emerging roles
2013
Quantification of insect genome divergence
2006
Systematic evaluation of spliced alignment programs for RNA-seq data
2013
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
2010
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
2011 StandoutNature
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach
2006
GENCODE: producing a reference annotation for ENCODE
2006
The major genetic risk factor for severe COVID-19 is inherited from Neanderthals
2020 StandoutNatureNobel
HISAT: a fast spliced aligner with low memory requirements
2015 Standout
A snoRNA modulates mRNA 3′ end processing and regulates the expression of a subset of mRNAs
2017
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
2010
RNA-binding proteins in human genetic disease
2020
Global Mapping of Human RNA-RNA Interactions
2016
Ensembl BioMarts: a hub for data retrieval across taxonomic space
2011 Standout
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
Phosphorylation of DGCR8 Increases Its Intracellular Stability and Induces a Progrowth miRNA Profile
2013
Primate iPS cells as tools for evolutionary analyses
2014 StandoutNobel
Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
2015 StandoutNature
Rationale in Custom Design of Transmembrane β-Barrel Pores
2024
Widespread transcription at neuronal activity-regulated enhancers
2010 StandoutNature
GeneWise and Genomewise
2004 Standout
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
2013 Nature
The Evolution of MicroRNA Pathway Protein Components in Cnidaria
2013
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
Refined sgRNA efficacy prediction improves large- and small-scale CRISPR–Cas9 applications
2017 StandoutNobel
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data
2010 Standout
Alternative transcription and alternative splicing in cancer
2012
Landscape and variation of RNA secondary structure across the human transcriptome
2014 Nature
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Alternative splicing and evolution: diversification, exon definition and function
2010
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
SPAS-1 (stimulator of prostatic adenocarcinoma-specific T cells)/SH3GLB2: A prostate tumor antigen identified by CTLA-4 blockade
2008 StandoutNobel
Convergent Evolution of Alternative Splices at Domain Boundaries of the BK Channel
2008
Heterochromatin protein 1α interacts with parallel RNA and DNA G-quadruplexes
2019
Ribonuclease III mechanisms of double‐stranded RNA cleavage
2013
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
A Prokaryotic Twist on Argonaute Function
2015
Drosha-independent DGCR8/Pasha pathway regulates neuronal morphogenesis
2014
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
2007 Standout
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
Mobilization of LINE-1 retrotransposons is restricted by Tex19.1 in mouse embryonic stem cells
2017
Trans -Splicing in Trypanosomes: Machinery and Its Impact on the Parasite Transcriptome
2011
The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients
2018 StandoutScience
CPEB4 is regulated during cell cycle by ERK2/Cdk1-mediated phosphorylation and its assembly into liquid-like droplets
2016
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
Regulatory Role of Small Nucleolar RNAs in Human Diseases
2015
Identification of novel transcripts in annotated genomes using RNA-Seq
2011
Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing
2013
Optimized design and assessment of whole genome tiling arrays
2007
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
2008
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
2008
Works of Eduardo Eyras being referenced
Differentiated evolutionary rates in alternative exons and the implications for splicing regulation
2006
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing
2021
EGASP: the human ENCODE Genome Annotation Assessment Project.
2006
Key contribution of CPEB4-mediated translational control to cancer progression
2011
Co-evolution of the branch site and SR proteins in eukaryotes
2008
DGCR8 HITS-CLIP reveals novel functions for the Microprocessor
2012
ESTGenes: Alternative Splicing From ESTs in Ensembl
2004
RBM5, 6, and 10 Differentially Regulate NUMB Alternative Splicing to Control Cancer Cell Proliferation
2013
Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression
2011
A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins
2015
Gene finding in the chicken genome
2005
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
2009
The Pivotal Roles of TIA Proteins in 5′ Splice-Site Selection of Alu Exons and Across Evolution
2009
The Microprocessor controls the activity of mammalian retrotransposons
2013
Deciphering 3′ss Selection in the Yeast Genome Reveals an RNA Thermosensor that Mediates Alternative Splicing
2011
RNA secondary structure mediates alternative 3′ss selection in Saccharomyces cerevisiae
2012
The Ensembl Automatic Gene Annotation System
2004
Exon creation and establishment in human genes
2008
Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes
2007
Methods to Study Splicing from High-Throughput RNA Sequencing Data
2014
The translational landscape of the splicing factor SRSF1 and its role in mitosis
2014
The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development
2016
Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing
2016