Citation Impact
Citing Papers
Computational protein design enables a novel one-carbon assimilation pathway
2015 StandoutNobel
Optimizing the Distribution of Resources between Enzymes of Carbon Metabolism Can Dramatically Increase Photosynthetic Rate: A Numerical Simulation Using an Evolutionary Algorithm
2007
Oxidative Stress
2017 Standout
Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59
2012 StandoutNobel
The biomass distribution on Earth
2018 Standout
Modulation of immune cell reactivity with cis -binding Siglec agonists
2021 StandoutNobel
Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism
2018
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
2019
Hypoxia-inducible factors and RAB22A mediate formation of microvesicles that stimulate breast cancer invasion and metastasis
2014 StandoutNobel
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs
2011
Inference and analysis of cell-cell communication using CellChat
2021 Standout
Hypoxia induces the breast cancer stem cell phenotype by HIF-dependent and ALKBH5-mediated m 6 A-demethylation of NANOG mRNA
2016 StandoutNobel
Quantifying tumor-infiltrating immune cells from transcriptomics data
2018
Breast Tumor Kinase (Brk/PTK6) Is a Mediator of Hypoxia-Associated Breast Cancer Progression
2013
Determining cell type abundance and expression from bulk tissues with digital cytometry
2019 Standout
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
Abiotic Stress Signaling and Responses in Plants
2016 Standout
The social network of microorganisms — how auxotrophies shape complex communities
2018
e‐photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis
2012
Laboratory evolution of peroxide-mediated cytochrome P450 hydroxylation
1999 StandoutNatureNobel
Effect of salinity stress on plants and its tolerance strategies: a review
2014 Standout
High-throughput functional annotation and data mining with the Blast2GO suite
2008 Standout
AMPK: guardian of metabolism and mitochondrial homeostasis
2017 Standout
Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases
2009
Increased Diels-Alderase activity through backbone remodeling guided by Foldit players
2012 StandoutNobel
The SIN3A histone deacetylase complex is required for a complete transcriptional response to hypoxia
2017 StandoutNobel
The genetics of ageing
2010 StandoutNature
Structural Analyses of Covalent Enzyme–Substrate Analog Complexes Reveal Strengths and Limitations of De Novo Enzyme Design
2011 StandoutNobel
In Silico Target Prediction for Small Molecules
2018
Web Services at the European Bioinformatics Institute
2007
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
An efficient algorithm for large-scale detection of protein families
2002 Standout
Controlling gene expression in response to stress
2011
eQuilibrator--the biochemical thermodynamics calculator
2011
Multiplexed protein measurement: technologies and applications of protein and antibody arrays
2006
Network pharmacology: the next paradigm in drug discovery
2008 Standout
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
2015 Standout
Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics
2018
Whither Ribosome Structure and Dynamics Research? (A Perspective)
2016 StandoutNobel
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Environmental Interactions and Epistasis Are Revealed in the Proteomic Responses to Complex Stimuli
2015
Sex and gender: modifiers of health, disease, and medicine
2020 Standout
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents
2020 Standout
Posttranscriptional Expression Regulation: What Determines Translation Rates?
2007
The Perseus computational platform for comprehensive analysis of (prote)omics data
2016 Standout
The Polarisome Is Required for Segregation and Retrograde Transport of Protein Aggregates
2010
Paracrine Induction of HIF by Glutamate in Breast Cancer: EglN1 Senses Cysteine
2016 StandoutNobel
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
Optimization of the In-Silico-Designed Kemp Eliminase KE70 by Computational Design and Directed Evolution
2011 StandoutNobel
Predicting function: from genes to genomes and back 1 1Edited by P. E. Wright
1998
Evaluation of Factors Related to Late Recurrence - Later than 10 Years after the Initial Treatment - in Primary Breast Cancer
2013 Standout
Budding and braking news about clathrin-mediated endocytosis
2013
Generator-specific targets of mitochondrial reactive oxygen species
2014
Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential
2015 Standout
Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies
2011 Standout
TrackMate: An open and extensible platform for single-particle tracking
2016 Standout
Is There a Toxicological Advantage for Non-hyperbolic Kinetics in Cytochrome P450 Catalysis?
2002
The Mechanistic Links Between Proteasome Activity, Aging and Agerelated Diseases
2014
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Adjuvant therapies for special types of breast cancer
2011
Computational modeling of cellular signaling processes embedded into dynamic spatial contexts
2012
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum
2013
The prognostic landscape of genes and infiltrating immune cells across human cancers
2015 Standout
Protein Sequence Editing of SKN-1A/Nrf1 by Peptide:N-Glycanase Controls Proteasome Gene Expression
2019 StandoutNobel
Deconstructing the molecular portraits of breast cancer
2010
Genomic instability in breast cancer: Pathogenesis and clinical implications
2010
The cellular and molecular origin of reactive oxygen species generation during myocardial ischemia and reperfusion
2011
Mitochondrial Uncoupling Proteins: Subtle Regulators of Cellular Redox SignalingReviewing Editors: Jerzy Beltowski, Joseph Burgoyne, Gabor Csanyi, Sergey Dikalov, Frank Krause, Anibal Vercesi, and Jeremy Ward
2018
Cytoprotective metal-organic frameworks for anaerobic bacteria
2018 StandoutNobel
TIMER2.0 for analysis of tumor-infiltrating immune cells
2020 Standout
How Mitochondrial Dynamism Orchestrates Mitophagy
2015
Surface-Enhanced Raman Spectroscopy for Bioanalysis: Reliability and Challenges
2018 Standout
Vacuole inheritance regulates cell size and branching frequency of Candida albicans hyphae
2008
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
2019 Standout
Fluorescent Sensors for Measuring Metal Ions in Living Systems
2014 Standout
Calcineurin-Crz1 Signaling in Lower Eukaryotes
2014
The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters
2011
Improvement of Biological Organisms Using Functional Material Shells
2016
Enhanced Detoxication Due to Distributive Catalysis and Toxic Thresholds: A Kinetic Analysis
1997
Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling
2015
Structural basis for germline antibody recognition of HIV-1 immunogens
2016
Reactive Oxygen Species (ROS)-Based Nanomedicine
2019 Standout
The Mononuclear Molybdenum Enzymes
2014 Standout
Structural basis for Zika envelope domain III recognition by a germline version of a recurrent neutralizing antibody
2020 StandoutNobel
Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism
2014
Stapled β-Hairpins Featuring 4-Mercaptoproline
2021 StandoutNobel
Photopharmacology: Beyond Proof of Principle
2014 StandoutNobel
Impact of scaffold rigidity on the design and evolution of an artificial Diels-Alderase
2014 StandoutNobel
The effect of turn residues on the folding and cell‐penetrating activity of β‐hairpin peptides and applications toward protein delivery
2019
Structure and Chemistry of Cytochrome P450
2005 Standout
Works of Edda Klipp being referenced
Selective benefits of damage partitioning in unicellular systems and its effects on aging
2008
Triple‐negative breast cancer: Present challenges and new perspectives
2010
Biophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activation
2010
Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
2006
Cell Penetrating Peptides and Cationic Antibacterial Peptides
2014
Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal‐transduction pathway
2009
Estimation of immune cell content in tumour tissue using single-cell RNA-seq data
2017
Alternative Pathways Might Mediate Toxicity of High Concentrations of Superoxide Dismutase
2004
Drug-efficacy depends on the inhibitor type and the target position in a metabolic network—A systematic study
2007
Global dynamic optimization approach to predict activation in metabolic pathways
2014
Prediction of temporal gene expression
2002
Superoxide production by cytochrome bc1 complex: A mathematical model
2014
Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires
2012
Biochemical network-based drug-target prediction
2010
Modelling the dynamics of the yeast pheromone pathway
2004
Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network
2007
Control Analysis of Unbranched Enzymatic Chains in States of Maximal Activity
1996
Integrative model of the response of yeast to osmotic shock
2005
A Quantitative Study of the Hog1 MAPK Response to Fluctuating Osmotic Stress in Saccharomyces cerevisiae
2010
Fungal Hsp90: a biological transistor that tunes cellular outputs to thermal inputs
2012
A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae
2016
Competition for enzymes in metabolic pathways:
1999
Minimum information requested in the annotation of biochemical models (MIRIAM)
2005
Evolutionary Optimization of Enzyme Kinetic Parameters; Effect of Constraints
1994
Bringing metabolic networks to life: convenience rate law and thermodynamic constraints
2006
Phosphoproteomic analyses reveal novel cross‐modulation mechanisms between two signaling pathways in yeast
2014
Role of gB and pUS3 in Equine Herpesvirus 1 Transfer between Peripheral Blood Mononuclear Cells and Endothelial Cells: a DynamicIn VitroModel
2015
Theoretical Approaches to the Evolutionary Optimization of Glycolysis
1997