Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Divergent Transcription from Active Promoters
2008 Science
Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing
2010
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
2009 Standout
Conserved N-terminal cysteine dioxygenases transduce responses to hypoxia in animals and plants
2019 StandoutScienceNobel
Mouse models of acute and chronic hepacivirus infection
2017 StandoutScienceNobel
Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
2008 StandoutScience
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Ferroptosis regulation by the NGLY1/NFE2L1 pathway
2022 StandoutNobel
Statistical Design and Analysis of RNA Sequencing Data
2010
PD-1 + regulatory T cells amplified by PD-1 blockade promote hyperprogression of cancer
2019 StandoutNobel
Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
2009 Science
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets
2011
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
A scaling normalization method for differential expression analysis of RNA-seq data
2010 Standout
The promise and challenge of therapeutic genome editing
2020 StandoutNatureNobel
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
TCC: an R package for comparing tag count data with robust normalization strategies
2013
Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes
2011
Productive Hepatitis C Virus Infection of Stem Cell-Derived Hepatocytes Reveals a Critical Transition to Viral Permissiveness during Differentiation
2012
Retinoic acid receptors: From molecular mechanisms to cancer therapy
2014
Ferroptosis as a p53-mediated activity during tumour suppression
2015 StandoutNature
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
De novo detection of differentially bound regions for ChIP-seq data using peaks and windows: controlling error rates correctly
2014
CD22 blockade restores homeostatic microglial phagocytosis in ageing brains
2019 StandoutNatureNobel
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
RNA sequencing: advances, challenges and opportunities
2010
Comprehensive comparative analysis of strand-specific RNA sequencing methods
2010
Natural regulatory mutations elevate the fetal globin gene via disruption of BCL11A or ZBTB7A binding
2018
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex
2014 Standout
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Annotating genomes with massive-scale RNA sequencing
2008
Personal and population genomics of human regulatory variation
2012
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
2012 StandoutNature
Mediator and cohesin connect gene expression and chromatin architecture
2010 Nature
Alternative splicing: a pivotal step between eukaryotic transcription and translation
2013
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Hypoxic Induction of the Regulator of G-Protein Signalling 4 Gene Is Mediated by the Hypoxia-Inducible Factor Pathway
2012
Transcript length bias in RNA-seq data confounds systems biology
2009
Pause locally, splice globally
2011
Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity?
2011 Standout
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
2010
A map of the cis-regulatory sequences in the mouse genome
2012 Nature
Pioneer transcription factors: establishing competence for gene expression
2011
RNA sequencing shows no dosage compensation of the active X-chromosome
2010
miR-122 regulates collagen production via targeting hepatic stellate cells and suppressing P4HA1 expression
2012
Analysis of variation at transcription factor binding sites in Drosophila and humans
2012
Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs
2011
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
What fraction of the human genome is functional?
2011
Long-Term Expansion of Functional Mouse and Human Hepatocytes as 3D Organoids
2018 StandoutNobel
Enhancers: five essential questions
2013
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
2009
Transcriptome genetics using second generation sequencing in a Caucasian population
2010 Nature
Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila
2011 StandoutNobel
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
2008
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
2008 Standout
Next Generation Sequencing Analysis of Human Platelet PolyA+ mRNAs and rRNA-Depleted Total RNA
2013 StandoutNobel
Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
2012
Transcriptome analysis by strand-specific sequencing of complementary DNA
2009
Conservation of core gene expression in vertebrate tissues
2009
Cotranscriptional splicing efficiency differs dramatically between Drosophila and mouse
2012 StandoutNobel
From RNA-seq reads to differential expression results
2010
Mouse models of human evolution
2014
Essential metabolic, anti-inflammatory, and anti-tumorigenic functions of miR-122 in liver
2012
RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing
2009
mRNA-Seq whole-transcriptome analysis of a single cell
2009 Standout
Topological domains in mammalian genomes identified by analysis of chromatin interactions
2012 StandoutNature
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
2010
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate
2012
Long non-coding RNAs: insights into functions
2009 Standout
circRNA Biogenesis Competes with Pre-mRNA Splicing
2014 Standout
Vitamin A and retinoid signaling: genomic and nongenomic effects
2013
FoxA1 directs the lineage and immunosuppressive properties of a novel regulatory T cell population in EAE and MS
2014
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
MicroRNA-122 plays a critical role in liver homeostasis and hepatocarcinogenesis
2012
mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain
2010
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Uncovering the Complexity of Transcriptomes with RNA-Seq
2010
RNA-seq: from technology to biology
2009
Structure of the STRA6 receptor for retinol uptake
2016 StandoutScienceNobel
Modeling host interactions with hepatitis B virus using primary and induced pluripotent stem cell-derived hepatocellular systems
2014 StandoutNobel
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
2012 Standout
Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development
2016 StandoutNobel
mir-276a strengthens Drosophila circadian rhythms by regulating timeless expression
2016 StandoutNobel
Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model
2008
Direct conversion of mouse fibroblasts to self-renewing, tripotent neural precursor cells
2012 StandoutNobel
Nascent-Seq reveals novel features of mouse circadian transcriptional regulation
2012 StandoutNobel
Differential Oestrogen Receptor Binding is Associated with Clinical Outcome in Breast Cancer
2012
Nascent-Seq analysis of Drosophila cycling gene expression
2013 StandoutNobel
Proteomic Mapping of Mitochondria in Living Cells via Spatially Restricted Enzymatic Tagging
2012
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
Cellular Homeostasis and Repair in the Mammalian Liver
2015
A distinct subpopulation of CD25−T-follicular regulatory cells localizes in the germinal centers
2017 StandoutNobel
Mitochondrial activation chemicals synergize with surface receptor PD-1 blockade for T cell-dependent antitumor activity
2017 StandoutNobel
Circadian neuron feedback controls the Drosophila sleep–activity profile
2016 StandoutNatureNobel
Works of Dominic Schmidt being referenced
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
2010 Science
A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
2008 Science
Species-Specific Transcription in Mice Carrying Human Chromosome 21
2008 Science
Cooperative interaction between retinoic acid receptor-α and estrogen receptor in breast cancer
2010
A CTCF-independent role for cohesin in tissue-specific transcription
2010
Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation
2010
Latent Regulatory Potential of Human-Specific Repetitive Elements
2012
Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules
2012
A Feedback Loop Between the Liver-Enriched Transcription Factor Network and Mir-122 Controls Hepatocyte Differentiation
2011
ChIP-seq: Using high-throughput sequencing to discover protein–DNA interactions
2009
Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages
2012
FOXA1 is a key determinant of estrogen receptor function and endocrine response
2010