Citation Impact
Citing Papers
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
2006 Standout
Escherichia coli Induces DNA Double-Strand Breaks in Eukaryotic Cells
2006 Science
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
2016 StandoutScience
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
2009 Standout
Innate and Adaptive Immunity Cooperate Flexibly to Maintain Host-Microbiota Mutualism
2009 StandoutScienceNobel
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
2010 Standout
Miniprimer PCR, a New Lens for Viewing the Microbial World
2007 StandoutNobel
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
2010 Standout
Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol
2008 StandoutNobel
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
2012 StandoutScience
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Pathogenicity islands: a molecular toolbox for bacterial virulence
2006
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
2004 Standout
Comparative Genomics of Multidrug Resistance in Acinetobacter baumannii
2006
Lateral gene transfer in eukaryotes
2005
Differential Regulation of Caspase-1 Activation, Pyroptosis, and Autophagy via Ipaf and ASC in Shigella-Infected Macrophages
2007
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
2016 Standout
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Small change: keeping pace with microevolution
2004
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Recognition of microorganisms and activation of the immune response
2007 StandoutNature
Host–pathogen interactions in urinary tract infection
2010
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
Repeated, Selection-Driven Genome Reduction of Accessory Genes in Experimental Populations
2012
PHASTER: a better, faster version of the PHAST phage search tool
2016 Standout
High-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy
2014 StandoutNobel
Genetic flux over time in the Salmonella lineage
2007
PHAST: A Fast Phage Search Tool
2011 Standout
Inferring genomic flux in bacteria
2008
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
An Integrative Method for Accurate Comparative Genome Mapping
2006
Evolution of the Terminal Regions of the Streptomyces Linear Chromosome
2006
Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor
2010
Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome
2012
Fluorescence Nanoscopy of Single DNA Molecules by Using Stimulated Emission Depletion (STED)
2011 StandoutNobel
Pathogenic Escherichia coli
2004 Standout
Understanding the mechanisms and drivers of antimicrobial resistance
2015 Standout
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
The Neolithic revolution of bacterial genomes
2006
Revisiting the Molecular Evolutionary History of Shigella spp.
2006
Re-evaluating prokaryotic species
2005
Fine-scale phylogenetic architecture of a complex bacterial community
2004 Nature
Can laboratory reference strains mirror ‘real-world’ pathogenesis?
2004
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
How pathogenic bacteria evade mammalian sabotage in the battle for iron
2006
Microbiology in the post-genomic era
2008
Analysis of Phenetic Trees Based on Metabolic Capabilites Across the Three Domains of Life
2004
Microbial Toll/interleukin 1 receptor proteins: A new class of virulence factors
2010
Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
2006
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
2006 Standout
Uncomplicated Urinary Tract Infection
2012 Standout
The Inflammasomes
2010 Standout
Do symbiotic bacteria subvert host immunity?
2009
Toxins-antitoxins: diversity, evolution and function
2011
Prophages and bacterial genomics: what have we learned so far?
2003
Archaea predominate among ammonia-oxidizing prokaryotes in soils
2006 StandoutNature
NCBI prokaryotic genome annotation pipeline
2016 Standout
Ribosomal RNA diversity predicts genome diversity in gut bacteria and their relatives
2010
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
2012 Standout
Molecular Pathogenesis ofShigellaspp.: Controlling Host Cell Signaling, Invasion, and Death by Type III Secretion
2008
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Functional information and the emergence of biocomplexity
2007 StandoutNobel
Lateral Gene Transfer and the Origins of Prokaryotic Groups
2003
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
ROS-based lethality of Caenorhabditis elegans mitochondrial electron transport mutants grown on Escherichia coli siderophore iron release mutants
2019 StandoutNobel
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
CRISPR-CasΦ from huge phages is a hypercompact genome editor
2020 StandoutScienceNobel
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
2008 Standout
Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism
2010 StandoutNobel
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Sequence‐Based Source Tracking of Escherichia coli Based on Genetic Diversity of β‐Glucuronidase
2004
Genomic Islands and the Ecology and Evolution of Prochlorococcus
2006 Science
The Pangenome Structure ofEscherichia coli: Comparative Genomic Analysis ofE. coliCommensal and Pathogenic Isolates
2008
GENOME TREES AND THE NATURE OF GENOME EVOLUTION
2005
Symbiosis as an adaptive process and source of phenotypic complexity
2007
Diverse and abundant antibiotic resistance genes in Chinese swine farms
2013 Standout
From Structure to Function: the Ecology of Host-Associated Microbial Communities
2010
Genomic insights that advance the species definition for prokaryotes
2005 Standout
A Microfluidic System for Large DNA Molecule Arrays
2004
ANTIBIOTICS TARGETING RIBOSOMES: Resistance, Selectivity, Synergism, and Cellular Regulation
2005 StandoutNobel
Microbiomes in light of traits: A phylogenetic perspective
2015 Science
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
2013
Application of Real-Time PCR To Study Effects of Ammonium on Population Size of Ammonia-Oxidizing Bacteria in Soil
2004
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
2005 Standout
Plant and Animal Sensors of Conserved Microbial Signatures
2010 StandoutScienceNobel
Waging War against UropathogenicEscherichia coli: Winning Back the Urinary Tract
2009
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli : A comparative genomics approach
2006
A novel role for antibiotic resistance plasmids in facilitating S almonella adaptation to non‐host environments
2013
The bacterial pan-genome:a new paradigm in microbiology.
2010
Insights into the Environmental Resistance Gene Pool from the Genome Sequence of the Multidrug-Resistant Environmental Isolate Escherichia coli SMS-3-5
2008
Works of Divya Rose being referenced
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
2002
Complete Genome Sequence and Comparative Genomics ofShigella flexneriSerotype 2a Strain 2457T
2003