Citation Impact
Citing Papers
The organization of the human cerebral cortex estimated by intrinsic functional connectivity
2011 Standout
Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool
2024 Standout
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Mutational landscape and significance across 12 major cancer types
2013 StandoutNature
Network based elucidation of drug response: from modulators to targets
2013
Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion
2011 Standout
Abiotic Stress Signaling and Responses in Plants
2016 Standout
A component based noise correction method (CompCor) for BOLD and perfusion based fMRI
2007 Standout
QM/MM Methods for Biomolecular Systems
2009 Standout
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
2016 Standout
Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data
2006 Standout
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
2010
Probabilistic Independent Component Analysis for Functional Magnetic Resonance Imaging
2004 Standout
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
2012 Standout
In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation
2007
Paralog Re-Emergence: A Novel, Historically Contingent Mechanism in the Evolution of Antimicrobial Resistance
2014
SCENIC: single-cell regulatory network inference and clustering
2017 Standout
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
CALIBRATING DIVERGENCE TIMES ON SPECIES TREES VERSUS GENE TREES: IMPLICATIONS FOR SPECIATION HISTORY OF APHELOCOMA JAYS
2010
The UCSC Table Browser data retrieval tool
2003 Standout
The WU-Minn Human Connectome Project: An overview
2013 Standout
The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)
2010 Standout
Large‐scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
2009
Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana
2004
From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
2007
Drug repurposing: progress, challenges and recommendations
2018 Standout
Dissociable Intrinsic Connectivity Networks for Salience Processing and Executive Control
2007 Standout
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
Advances in functional and structural MR image analysis and implementation as FSL
2004 Standout
Detection of recombination events in bacterial genomes from large population samples
2011
A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?
2006
Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
2006
High diversity of arbuscular mycorrhizal fungi in a boreal herb‐rich coniferous forest
2008
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
2012 Standout
Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera)
2006
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
2015 Standout
Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm
2006
Bayesian Estimation of Beta Mixture Models with Variational Inference
2011
Reverse engineering and verification of gene networks: Principles, assumptions, and limitations of present methods and future perspectives
2009
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
2006
Mapping and quantifying mammalian transcriptomes by RNA-Seq
2008 Standout
STAR NET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data
2009
Analysing recombination in nucleotide sequences
2011
Visualization of multiple alignments, phylogenies and gene family evolution
2010
Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis
2004
Serology-Enabled Discovery of Genetically Diverse Hepaciviruses in a New Host
2012 StandoutNobel
Model-Based Clustering, Discriminant Analysis, and Density Estimation
2002 Standout
Machine learning of linear differential equations using Gaussian processes
2017
Computer Simulation of Liquids
2017 Standout
Escaping free-energy minima
2002 Standout
Automated reverse engineering of nonlinear dynamical systems
2007
A critical role for the right fronto-insular cortex in switching between central-executive and default-mode networks
2008 Standout
Immuno-Navigator, a batch-corrected coexpression database, reveals cell type-specific gene networks in the immune system
2016 StandoutNobel
Community detection in graphs
2009 Standout
Neural networks for short-term load forecasting: a review and evaluation
2001 Standout
An empirical Bayes approach to inferring large-scale gene association networks
2004
Obtaining reaction coordinates by likelihood maximization
2006
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
Default-mode network activity distinguishes Alzheimer's disease from healthy aging: Evidence from functional MRI
2004 Standout
Predicting slow structural transitions in macromolecular systems: Conformational flooding
1995
Functional association networks as priors for gene regulatory network inference
2014
Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks
2006
Physics-informed neural networks: A deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations
2018 Standout
Calcineurin-Crz1 Signaling in Lower Eukaryotes
2014
Worldwide emergence of resistance to antifungal drugs challenges human health and food security
2018 StandoutScience
Toward integrating feature selection algorithms for classification and clustering
2005
MissForest—non-parametric missing value imputation for mixed-type data
2011 Standout
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
2018 Standout
Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach
2009
Estimation of absolute and relative entropies of macromolecules using the covariance matrix
1993
Correspondence of the brain's functional architecture during activation and rest
2009 Standout
Species Delimitation Using a Combined Coalescent and Information-Theoretic Approach: An Example from North American Myotis Bats
2010
Assessing a mixture model for clustering with the integrated completed likelihood
2000
Toward Accurate Microscopic Calculation of Solvation Entropies: Extending the Restraint Release Approach to Studies of Solvation Effects
2009 StandoutNobel
A general species delimitation method with applications to phylogenetic placements
2013 Standout
Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework
2009
Discovering governing equations from data by sparse identification of nonlinear dynamical systems
2016 Standout
A pattern recognition approach to infer time-lagged genetic interactions
2008
Distilling Free-Form Natural Laws from Experimental Data
2009 StandoutScience
The organization of the human cerebellum estimated by intrinsic functional connectivity
2011 Standout
Consistent resting-state networks across healthy subjects
2006 Standout
Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution
2012 StandoutNobel
A review of feature selection techniques in bioinformatics
2007 Standout
Exploiting AIS Data for Intelligent Maritime Navigation: A Comprehensive Survey From Data to Methodology
2017 Standout
Works of Dirk Husmeier being referenced
ODE parameter inference using adaptive gradient matching with Gaussian processes
2013
Clustering objects on subsets of attributes
2004
Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments
2008
Detecting Recombination in 4-Taxa DNA Sequence Alignments with Bayesian Hidden Markov Models and Markov Chain Monte Carlo
2003
Structural fluctuations and conformational entropy in proteins: entropy balance in an intramolecular reaction in methemoglobin
1992
Detecting recombination with MCMC
2002
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
2003
Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge
2007
TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments
2004
Detection of Recombination in DNA Multiple Alignments with Hidden Markov Models
2001
Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks
2006
Bayesian approaches to Gaussian mixture modeling
1998
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
2008
Neural Networks for Conditional Probability Estimation: Forecasting Beyond Point Predictions
1999
Neural Networks for Conditional Probability Estimation
1999
Reverse engineering of genetic networks with Bayesian networks
2003
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models
2005
Probabilistic Modeling in Bioinformatics and Medical Informatics
2005
BAYESIAN INTEGRATION OF BIOLOGICAL PRIOR KNOWLEDGE INTO THE RECONSTRUCTION OF GENE REGULATORY NETWORKS WITH BAYESIAN NETWORKS
2007