Standout Papers
Citation Impact
Citing Papers
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
2017 Standout
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
2020 Standout
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Genomic Characterization of a Newly Discovered Coronavirus Associated with Acute Respiratory Distress Syndrome in Humans
2012
Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils
2015
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
Systematic exploration of guide-tree topology effects for small protein alignments
2014
OrthoFinder: phylogenetic orthology inference for comparative genomics
2019 Standout
SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets
2018
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation
2023 Standout
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
2014 Standout
Coronavirus biology and replication: implications for SARS-CoV-2
2020 Standout
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
2013
Mechanisms of SARS-CoV-2 entry into cells
2021 Standout
Regulation of microRNA function in animals
2018 Standout
TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
2020 Standout
Ultrafast Approximation for Phylogenetic Bootstrap
2013 Standout
Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis
2016
Human Genetics Shape the Gut Microbiome
2014 Standout
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
2013
Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae
2013
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
2016
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
2014 Standout
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
2016 Standout
Evolutionarily Conserved Roles of the Dicer Helicase Domain in Regulating RNA Interference Processing
2014 StandoutNobel
SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant
2020
Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses
2015
Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems
2019 StandoutNobel
Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome
2017
The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function
2022
Redefining the invertebrate RNA virosphere
2016 Nature
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Expanded classification of hepatitis C virus into 7 genotypes and 67 subtypes: Updated criteria and genotype assignment web resource
2013 StandoutNobel
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
2016 Standout
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
2017 Standout
The evolutionary history of vertebrate RNA viruses
2018 Nature
Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein
2020 Standout
In Silico Reconstruction of the Viral Evolutionary Lineage Yields a Potent Gene Therapy Vector
2015
Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC
2013 StandoutNature
Adeno-associated virus vector as a platform for gene therapy delivery
2019 Standout
SARS-CoV-2 variants reveal features critical for replication in primary human cells
2021
The earliest Denisovans and their cultural adaptation
2021 StandoutNobel
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices
2013
Evolution of Animal and Plant Dicers: Early Parallel Duplications and Recurrent Adaptation of Antiviral RNA Binding in Plants
2012
miRNA independent hepacivirus variants suggest a strong evolutionary pressure to maintain miR-122 dependence
2017 StandoutNobel
A planarian nidovirus expands the limits of RNA genome size
2018
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
2020 Standout
Structure of the decoy module of human glycoprotein 2 and uromodulin and its interaction with bacterial adhesin FimH
2022 StandoutNobel
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
Three rings for the evolution of plastid shape: a tale of land plant FtsZ
2017
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae
2017
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
Cyanobacterial blooms
2018 Standout
STAMP: statistical analysis of taxonomic and functional profiles
2014 Standout
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
2018 Standout
UFBoot2: Improving the Ultrafast Bootstrap Approximation
2017 Standout
Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets
2017
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
2013
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes
2022 StandoutScienceNobel
Recombination in Hepatitis C Virus
2011
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
2018 Standout
Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
2015
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
2019 Standout
ModelOMatic: Fast and Automated Model Selection between RY, Nucleotide, Amino Acid, and Codon Substitution Models
2014
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
2018 Standout
ASTRAL: genome-scale coalescent-based species tree estimation
2014 Standout
Reactive oxygen species, abiotic stress and stress combination
2016 Standout
Works of Diego Darriba being referenced
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
2019 Standout
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
2019
jmodeltest.org: selection of nucleotide substitution models on the cloud
2014
The Phylogenetic Likelihood Library
2014
ProtTest 3: fast selection of best-fit models of protein evolution
2011 Standout