Citation Impact
Citing Papers
Introducing ribosomal tandem repeat barcoding for fungi
2018
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
2010 Science
Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection
2019
Assembly and ecological function of the root microbiome across angiosperm plant species
2018
Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA
2011 StandoutScience
Desert plant bacteria reveal host influence and beneficial plant growth properties
2018
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
2011 Standout
H2A.Z landscapes and dual modifications in pluripotent and multipotent stem cells underlie complex genome regulatory functions
2012
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
2016
DNA interrogation by the CRISPR RNA-guided endonuclease Cas9
2014 StandoutNatureNobel
Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
2009
BatchPrimer3: A high throughput web application for PCR and sequencing primer design
2008
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
2009
Discovery of barley miRNAs through deep sequencing of short reads
2011
Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.)
2010 Standout
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation
2007
Abiotic Stress Signaling and Responses in Plants
2016 Standout
Functions of DNA methylation: islands, start sites, gene bodies and beyond
2012 Standout
CpG islands and the regulation of transcription
2011 Standout
Plant Growth-Promoting Rhizobacteria: Context, Mechanisms of Action, and Roadmap to Commercialization of Biostimulants for Sustainable Agriculture
2018
Ecological patterns of seed microbiome diversity, transmission, and assembly
2017
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
2016 Standout
High-efficiency Agrobacterium-mediated transformation of Brachypodium distachyon inbred line Bd21-3
2007
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Genome-wide association study of Arabidopsis thaliana leaf microbial community
2014
Histone H3 lysine 4 methylation is associated with the transcriptional reprogramming efficiency of somatic nuclei by oocytes
2010 StandoutNobel
Primer3—new capabilities and interfaces
2012 Standout
Sixty Million Years in Evolution of Soft Grain Trait in Grasses: Emergence of the Softness Locus in the Common Ancestor of Pooideae and Ehrhartoideae, after their Divergence from Panicoideae
2009
Rhizosphere microorganisms can influence the timing of plant flowering
2018
ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
2009
Microbiota and Host Nutrition across Plant and Animal Kingdoms
2015
Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition
2009
Nucleosomes Containing Methylated DNA Stabilize DNA Methyltransferases 3A/3B and Ensure Faithful Epigenetic Inheritance
2011
Coral reefs in the Anthropocene
2017 StandoutNature
Chromatin mechanisms in genomic imprinting
2009
Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
2010
Mechanisms of nuclear reprogramming by eggs and oocytes: a deterministic process?
2011 StandoutNobel
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
2017 StandoutNature
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
Lr34 multi‐pathogen resistance ABC transporter: molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species
2010
Epigenetics in cancer
2009 Standout
H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes
2010
Cell-free nucleic acids as biomarkers in cancer patients
2011 Standout
Regulation and function of DNA methylation in plants and animals
2011
Nuclear actin polymerization is required for transcriptional reprogramming of Oct4 by oocytes
2011 StandoutNobel
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Let the Core Microbiota Be Functional
2017
Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival
2018
BAC 'landing' on chromosomes of Brachypodium distachyon for comparative genome alignment
2007
Harnessing Host-Vector Microbiome for Sustainable Plant Disease Management of Phloem-Limited Bacteria
2016
H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis
2009
Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome
2016
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
2018
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
2016
H2A.Z Facilitates Access of Active and Repressive Complexes to Chromatin in Embryonic Stem Cell Self-Renewal and Differentiation
2012
psRNATarget: a plant small RNA target analysis server
2011 Standout
Charting histone modifications and the functional organization of mammalian genomes
2010
H2AZ Is Enriched at Polycomb Complex Target Genes in ES Cells and Is Necessary for Lineage Commitment
2008
Toward a Resilient, Functional Microbiome: Drought Tolerance-Alleviating Microbes for Sustainable Agriculture
2017
Brown gold of marginal soil: Plant growth promoting bacteria to overcome plant abiotic stress for agriculture, biofuels and carbon sequestration
2019 Standout
Rethinking how DNA methylation patterns are maintained
2009
Epigenetic modifications and human disease
2010 Standout
Effects ofPHENYLALANINE AMMONIA LYASE(PAL) knockdown on cell wall composition, biomass digestibility, and biotic and abiotic stress responses inBrachypodium
2015
Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy
2017 Standout
Idiopathic pulmonary fibrosis
2011 Standout
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
2010 StandoutNature
CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes
2013 StandoutNobel
A decade of exploring the cancer epigenome — biological and translational implications
2011 Standout
Epigenetic reprogramming in mammalian reproduction: Contribution from histone variants
2009
Hypomethylation of a LINE-1 Promoter Activates an Alternate Transcript of the MET Oncogene in Bladders with Cancer
2010
Histone variants — ancient wrap artists of the epigenome
2010
Human DNA methylomes at base resolution show widespread epigenomic differences
2009 StandoutNature
Communication in the Phytobiome
2017
Phytozome: a comparative platform for green plant genomics
2011 Standout
Soil microbiomes and climate change
2019 Standout
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
2013
Stem cell-derived polarized hepatocytes
2020 StandoutNobel
Linking DNA methylation and histone modification: patterns and paradigms
2009 Standout
The Polycomb complex PRC2 and its mark in life
2011 StandoutNature
Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
2017
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
2018
Chromatin structure and the inheritance of epigenetic information
2010
CTCF, cohesin, and histone variants: connecting the genome
2011
Development of Genetic and Genomic Research Resources for Brachypodium distachyon, a New Model System for Grass Crop Research
2008
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
p‐Coumaroyl‐C oA :monolignol transferase (PMT ) acts specifically in the lignin biosynthetic pathway in B rachypodium distachyon
2013
The importance of the microbiome of the plant holobiont
2015
Prediction of genome-wide DNA methylation in repetitive elements
2017
Paving the Way for Lignin Valorisation: Recent Advances in Bioengineering, Biorefining and Catalysis
2016 Standout
Histone variant macroH2A confers resistance to nuclear reprogramming
2011 StandoutNobel
Managing and manipulating the rhizosphere microbiome for plant health: A systems approach
2017
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Recruitment of Polycomb group complexes and their role in the dynamic regulation of cell fate choice
2009
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
Field study reveals core plant microbiota and relative importance of their drivers
2017
Cereal breeding takes a walk on the wild side
2007
Soil microbes alter plant fitness under competition and drought
2019
Local DNA hypomethylation activates genes in rice endosperm
2010
Ecology and Evolution of Plant Microbiomes
2019
DNA methylation in the central and efferent limbs of the chemoreflex requires carotid body neural activity
2017 StandoutNobel
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Unique aspects of the grass cell wall
2008
Building coral reef resilience through assisted evolution
2015
Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution
2008
Abiotic Stresses Shift Belowground Populus -Associated Bacteria Toward a Core Stress Microbiome
2018
An SSR-based genetic linkage map of the model grassBrachypodium distachyon
2010
Conservation and divergence of methylation patterning in plants and animals
2010 Standout
Rapid recent growth and divergence of rice nuclear genomes
2004
Breeding Technologies to Increase Crop Production in a Changing World
2010 StandoutScience
Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations
2019
Epigenetic regulation in pluripotent stem cells: a key to breaking the epigenetic barrier
2012 StandoutNobel
The impact of bacteriophages on phyllosphere bacterial abundance and composition
2018
Native soils with their microbiotas elicit a state of alert in tomato plants
2018
Mechanisms of Diabetic Complications
2013 Standout
Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition
2017
From hairballs to hypotheses–biological insights from microbial networks
2018
Molecular, morphological, and cytological analysis of diverseBrachypodium distachyoninbred lines
2009
Soil microbial community responses to heat wave components: drought and high temperature
2015
Histone H3K27ac separates active from poised enhancers and predicts developmental state
2010 Standout
Disrupting the cinnamyl alcohol dehydrogenase 1 gene (BdCAD 1) leads to altered lignification and improved saccharification in Brachypodium distachyon
2012
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Analysis of Intraspecies Diversity in Wheat and Barley Genomes Identifies Breakpoints of Ancient Haplotypes and Provides Insight into the Structure of Diploid and Hexaploid Triticeae Gene Pools
2008
Interplay Between Innate Immunity and the Plant Microbiota
2017
Works of Devin Coleman‐Derr being referenced
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
2014
The complete chloroplast genome sequence of Brachypodium distachyon: sequence comparison and phylogenetic analysis of eight grass plastomes
2008
DNA Methylation, H2A.Z, and the Regulation of Constitutive Expression
2012
EST sequencing and phylogenetic analysis of the model grass Brachypodium distachyon
2006
Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance
2014
The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences
2007
The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
2013
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
2008 Nature
Drought Stress and Root-Associated Bacterial Communities
2018
Rapid evolution and complex structural organization in genomic regions harboring multiple prolamin genes in the polyploid wheat genome
2007
The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity
2016
Drought and host selection influence bacterial community dynamics in the grass root microbiome
2017
Rapid Genome Evolution Revealed by Comparative Sequence Analysis of Orthologous Regions from Four Triticeae Genomes
2004
Construction and characterization of two BAC libraries fromBrachypodium distachyon, a new model for grass genomics
2006
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
2015
High-resolution phylogenetic microbial community profiling
2016
Types and Rates of Sequence Evolution at the High-Molecular-Weight Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes
2006