Citation Impact
Citing Papers
Potent CRISPR-Cas9 inhibitors from Staphylococcus genomes
2020 StandoutNobel
Programmable RNA recognition using a CRISPR-associated Argonaute
2018 StandoutNobel
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
2011 StandoutScience
Obesity alters gut microbial ecology
2005 Standout
A bacterium that degrades and assimilates poly(ethylene terephthalate)
2016 StandoutScience
Metagenomic Analysis of the Human Distal Gut Microbiome
2006 StandoutScience
Machine learning predicts new anti-CRISPR proteins
2020 StandoutNobel
Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways
2013 StandoutScience
Roary: rapid large-scale prokaryote pan genome analysis
2015 Standout
The gut microbiota and host health: a new clinical frontier
2015 Standout
Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function
2010 StandoutNobel
Creating new fluorescent probes for cell biology
2002 StandoutNobel
Eukaryotic Fatty Acylation Drives Plasma Membrane Targeting and Enhances Function of Several Type III Effector Proteins from Pseudomonas syringae
2000
John Snow's legacy: epidemiology without borders
2013 StandoutNobel
Interactions between the microbiota, immune and nervous systems in health and disease
2017 Standout
Changes of Intestinal Functions in Liver Cirrhosis
2016 Standout
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
2015 StandoutNature
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Pseudomonas type III effector AvrPtoB induces plant disease susceptibility by inhibition of host programmed cell death
2002
Mining the Human Gut Microbiota for Immunomodulatory Organisms
2017
Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance
2003
Dual Detection of Fungal Infections in Drosophila via Recognition of Glucans and Sensing of Virulence Factors
2006 StandoutNobel
Genetic and molecular evidence that the Pseudomonas syringae type III effector protein AvrRpt2 is a cysteine protease
2003
Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales
2011
Programmable RNA Tracking in Live Cells with CRISPR/Cas9
2016 StandoutNobel
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria
2009 Standout
Toll-Like Receptor 4 Mediates Alcohol-Induced Steatohepatitis Through Bone Marrow-Derived and Endogenous Liver Cells in Mice
2011
The Secret Life of the Anthrax Agent Bacillus anthracis: Bacteriophage-Mediated Ecological Adaptations
2009
PHASTER: a better, faster version of the PHAST phage search tool
2016 Standout
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The Origin of the Haitian Cholera Outbreak Strain
2010
A Gene in the Pseudomonas syringae pv. tomato Hrp Pathogenicity Island Conserved Effector Locus, hopPtoA1, Contributes to Efficient Formation of Bacterial Colonies in Planta and Is Duplicated Elsewhere in the Genome
2002
JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling
2007 StandoutNature
PHAST: A Fast Phage Search Tool
2011 Standout
Methods to determine intestinal permeability and bacterial translocation during liver disease
2015
Bacterial translocation and changes in the intestinal microbiome associated with alcoholic liver disease
2012
Molecular Insights into the Biosynthesis of Guadinomine: A Type III Secretion System Inhibitor
2012 StandoutNobel
Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
2007
Pathological bacterial translocation in liver cirrhosis
2013
RpoD Promoters in Campylobacter jejuni Exhibit a Strong Periodic Signal Instead of a −35 Box
2003
Gut–Liver Axis in Alcoholic Liver Disease
2014
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
2012 StandoutNature
Localization of ASH1 mRNA Particles in Living Yeast
1998
Analysis of the Gut Microbiota in the Old Order Amish and Its Relation to the Metabolic Syndrome
2012
The extracytoplasmic function sigma factors: role in bacterial pathogenesis
2004
Plant pathogens and integrated defence responses to infection
2001 StandoutNature
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates
2011
Effector proteins of phytopathogenic bacteria: bifunctional signals in virulence and host recognition
2000
MAP kinase signalling cascade in Arabidopsis innate immunity
2002 StandoutNature
Characterization of fecal microbial communities in patients with liver cirrhosis
2011
Short Dysfunctional Telomeres Impair Tumorigenesis in the INK4aΔ2/3 Cancer-Prone Mouse
1999 StandoutNobel
Alcoholic Liver Disease: Pathogenesis and New Therapeutic Targets
2011 Standout
Genome‐wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7
2006
Two Pseudomonas syringae Type III Effectors Inhibit RIN4-Regulated Basal Defense in Arabidopsis
2005
Intestinal bacterial translocation in rats with cirrhosis is related to compromised paneth cell antimicrobial host defense
2011
Obeticholic acid reduces bacterial translocation and inhibits intestinal inflammation in cirrhotic rats
2015
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
A 20-year retrospective review of global aquaculture
2021 StandoutNature
Virulence systems of Pseudomonas syringae pv. tomato promote bacterial speck disease in tomato by targeting the jasmonate signaling pathway
2003
Ethanol metabolism and its effects on the intestinal epithelial barrier
2013
Dysbiosis Contributes to Fibrogenesis in the Course of Chronic Liver Injury in Mice
2013
Plant targets for Pseudomonas syringae type III effectors: virulence targets or guarded decoys?
2011
Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance
2006
The plant immune system
2006 StandoutNature
Living inside plants: bacterial endophytes
2011
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
2011
Gut microbiota-related complications in cirrhosis
2014
The human microbiome: at the interface of health and disease
2012 Standout
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
Common and Contrasting Themes of Plant and Animal Diseases
2001 Science
Diverse Evolutionary Mechanisms Shape the Type III Effector Virulence Factor Repertoire in the Plant Pathogen Pseudomonas syringae
2004
TYPE III SECRETION SYSTEM EFFECTOR PROTEINS: Double Agents in Bacterial Disease and Plant Defense
2004
VirSorter: mining viral signal from microbial genomic data
2015
Classification and quantification of bacteriophage taxa in human gut metagenomes
2014
Interactions Between the Microbiota and the Immune System
2012 StandoutScience
Systematic discovery of natural CRISPR-Cas12a inhibitors
2018 StandoutScienceNobel
Dialogue between E. coli free radical pathways and the mitochondria of C. elegans
2015 StandoutNobel
Genomes in Focus: Development and Applications of CRISPR‐Cas9 Imaging Technologies
2017 StandoutNobel
Microbial Translocation in Chronic Liver Diseases
2012
Characterization of the Pseudomonas syringae pv. tomato AvrRpt2 protein: demonstration of secretion and processing during bacterial pathogenesis
1999
Antimicrobial use in aquaculture re‐examined: its relevance to antimicrobial resistance and to animal and human health
2013
The Membrane-Anchored BOTRYTIS-INDUCED KINASE1 Plays Distinct Roles in Arabidopsis Resistance to Necrotrophic and Biotrophic Pathogens
2005
Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase
2013 StandoutNobel
Process of Protein Transport by the Type III Secretion System
2004
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
2012
NEW INSIGHTS TO THE FUNCTION OF PHYTOPATHOGENIC BACTERIAL TYPE III EFFECTORS IN PLANTS
2005
The commensal microbiome is associated with anti–PD-1 efficacy in metastatic melanoma patients
2018 StandoutScience
Fibrosis — A Common Pathway to Organ Injury and Failure
2015 Standout
Subterfuge and Manipulation: Type III Effector Proteins of Phytopathogenic Bacteria
2006
Xanthomonas T3S Effector XopN Suppresses PAMP-Triggered Immunity and Interacts with a Tomato Atypical Receptor-Like Kinase and TFT1
2009
Intestinal epithelial barrier function in liver cirrhosis: an extensive review of the literature
2013
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
2005
Type III Secretion Machines: Bacterial Devices for Protein Delivery into Host Cells
1999 Science
Helicobacter pylori Virulence and Genetic Geography
1999 StandoutScience
The Arabidopsis Thaliana-Pseudomonas Syringae Interaction
2002
The ecology of the microbiome: Networks, competition, and stability
2015 StandoutScience
Alcoholic Liver Disease: The Gut Microbiome and Liver Cross Talk
2015
Prophinder: a computational tool for prophage prediction in prokaryotic genomes
2008
Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto
2001
Type III secretion systems and bacterial flagella: Insights into their function from structural similarities
2003
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
Aptamers Switch on Fluorescence of Triphenylmethane Dyes
2003 StandoutNobel
Gut Microbiota and Host Reaction in Liver Diseases
2015
Global Analysis of Protein Activities Using Proteome Chips
2001 StandoutScience
Works of Derrick E. Fouts being referenced
Integrated next-generation sequencing of 16S rDNA and metaproteomics differentiate the healthy urine microbiome from asymptomatic bacteriuria in neuropathic bladder associated with spinal cord injury
2012
The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages
2006
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences
2006
Functional recognition of fragmented operator sites by R17/MS2 coat protein, a translational repressor
1997
Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice
2008
A Pseudomonas syringae pv. tomato DC3000 Hrp (Type III Secretion) Deletion Mutant Expressing the Hrp System of Bean Pathogen P. syringae pv. syringae 61 Retains Normal Host Specificity for Tomato
2003
Bacterial translocation and changes in the intestinal microbiome in mouse models of liver disease
2012
Intestinal REG3 Lectins Protect against Alcoholic Steatohepatitis by Reducing Mucosa-Associated Microbiota and Preventing Bacterial Translocation
2016
Comparative ICE Genomics: Insights into the Evolution of the SXT/R391 Family of ICEs
2009
Enteric dysbiosis associated with a mouse model of alcoholic liver disease
2010
Supplementation of Saturated Long-Chain Fatty Acids Maintains Intestinal Eubiosis and Reduces Ethanol-induced Liver Injury in Mice
2014
Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche
2010
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species
2012
Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals
1999
A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr proteins in culture
1998
Pseudomonas syringae Hrp type III secretion system and effector proteins
2000
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor
2002
The Avr (Effector) Proteins HrmA (HopPsyA) and AvrPto Are Secreted in Culture from Pseudomonas syringaePathovars via the Hrp (Type III) Protein Secretion System in a Temperature- and pH-Sensitive Manner
1999