Citation Impact
Citing Papers
Human cerebral organoids recapitulate gene expression programs of fetal neocortex development
2015 StandoutNobel
The Sequence Alignment/Map format and SAMtools
2009 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Denisovan ancestry and population history of early East Asians
2020 StandoutScienceNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
2013 StandoutNobel
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
The genome of the offspring of a Neanderthal mother and a Denisovan father
2018 StandoutNatureNobel
A mitochondrial genome sequence of a hominin from Sima de los Huesos
2013 StandoutNatureNobel
Mammalian microRNAs predominantly act to decrease target mRNA levels
2010 StandoutNature
Gut metagenome in European women with normal, impaired and diabetic glucose control
2013 StandoutNature
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
2012
Fast gapped-read alignment with Bowtie 2
2012 Standout
Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins
2016 StandoutNatureNobel
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
2013 Standout
Integrase-mediated spacer acquisition during CRISPR–Cas adaptive immunity
2015 StandoutNatureNobel
N6-methyladenosine-dependent regulation of messenger RNA stability
2013 StandoutNature
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
2012 StandoutNatureNobel
Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade
2017 StandoutNobel
A survey of sequence alignment algorithms for next-generation sequencing
2010
Human DNA methylomes at base resolution show widespread epigenomic differences
2009 StandoutNature
Loss of IFN-γ Pathway Genes in Tumor Cells as a Mechanism of Resistance to Anti-CTLA-4 Therapy
2016 StandoutNobel
Comprehensive Integration of Single-Cell Data
2019 Standout
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal
2015 StandoutNobel
DNA analysis of an early modern human from Tianyuan Cave, China
2013 StandoutNobel
Modeling and automation of sequencing-based characterization of RNA structure
2011 StandoutNobel
Mason
2010
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
2011 StandoutNobel
Fast and accurate long-read alignment with Burrows–Wheeler transform
2010 Standout
Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
2014 StandoutNobel
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
2013 Standout
Fast and SNP-tolerant detection of complex variants and splicing in short reads
2010
Gain-of-function mutations in the mechanically activated ion channel PIEZO2 cause a subtype of Distal Arthrogryposis
2013 StandoutNobel
Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations
2018 StandoutScienceNobel
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 Standout
Fast and accurate short read alignment with Burrows–Wheeler transform
2009 Standout
Nuclear and mitochondrial DNA sequences from two Denisovan individuals
2015 StandoutNobel
Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
2013 StandoutNobel
Nascent-Seq analysis of Drosophila cycling gene expression
2013 StandoutNobel
TopHat: discovering splice junctions with RNA-Seq
2009 Standout
The makers of the Protoaurignacian and implications for Neandertal extinction
2015 StandoutScienceNobel
Mitochondrial activation chemicals synergize with surface receptor PD-1 blockade for T cell-dependent antitumor activity
2017 StandoutNobel
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
Circadian neuron feedback controls the Drosophila sleep–activity profile
2016 StandoutNatureNobel
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition
2017 StandoutNobel
Works of David Weese being referenced
A novel and well-defined benchmarking method for second generation read mapping
2011
STELLAR: fast and exact local alignments
2011
RazerS—fast read mapping with sensitivity control
2009
SeqAn An efficient, generic C++ library for sequence analysis
2008
Segment-based multiple sequence alignment
2008
RazerS 3: Faster, fully sensitive read mapping
2012
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads
2009