Citation Impact
Citing Papers
Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS
2018 StandoutNobel
Single-Molecule Imaging of an in Vitro -Evolved RNA Aptamer Reveals Homogeneous Ligand Binding Kinetics
2009 StandoutNobel
Single Reconstituted Neuronal SNARE Complexes Zipper in Three Distinct Stages
2012 StandoutScienceNobel
Shortwave infrared fluorescence imaging with the clinically approved near-infrared dye indocyanine green
2018 StandoutNobel
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Structural inference of native and partially folded RNA by high-throughput contact mapping
2008 StandoutNobel
Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method
2006
A Genomewide Search for Ribozymes Reveals an HDV-Like Sequence in the Human CPEB3 Gene
2006 StandoutScienceNobel
Automated de novo prediction of native-like RNA tertiary structures
2007 StandoutNobel
Direct single-molecule observation of a protein living in two opposed native structures
2009
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
The group II intron ribonucleoprotein precursor is a large, loosely packed structure
2010 StandoutNobel
Unravelling biological macromolecules with cryo-electron microscopy
2016 Nature
Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins
2014
Dynamic personalities of proteins
2007 StandoutNature
A conformational switch controls hepatitis delta virus ribozyme catalysis
2004 StandoutNatureNobel
Common conformational changes induced in type 2 picornavirus IRESs by cognate trans-acting factors
2011
Quantum dots versus organic dyes as fluorescent labels
2008 Standout
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
Analysis of Single-Molecule FRET Trajectories Using Hidden Markov Modeling
2006
Structure, folding and mechanisms of ribozymes
2005
Single‐Molecule Quantum‐Dot Fluorescence Resonance Energy Transfer
2005
Cations and Hydration in Catalytic RNA: Molecular Dynamics of the Hepatitis Delta Virus Ribozyme
2006
Theophylline detection using an aptamer and DNA–gold nanoparticle conjugates
2010
A repulsive field: advances in the electrostatics of the ion atmosphere
2008
Conformational Control of Energy Transfer: A Mechanism for Biocompatible Nanocrystal‐Based Sensors
2012 StandoutNobel
A Dynamic Search Process Underlies MicroRNA Targeting
2015
From unwinding to clamping — the DEAD box RNA helicase family
2011
Branching Out of Single‐Molecule Fluorescence Spectroscopy: Challenges for Chemistry and Influence on Biology
2005
Protein induced fluorescence enhancement (PIFE) for probing protein–nucleic acid interactions
2013
Dynamic RNA Modifications in Gene Expression Regulation
2017 Standout
N6-Methyladenosine Modification in a Long Noncoding RNA Hairpin Predisposes Its Conformation to Protein Binding
2015
Metazoan MicroRNAs
2018 Standout
Interaction of APOBEC3A with DNA Assessed by Atomic Force Microscopy
2014
Deconstructing the photon stream from single nanocrystals: from binning to correlation
2013 StandoutNobel
Structure of mammalian eIF3 in the context of the 43S preinitiation complex
2015 StandoutNatureNobel
Information Bounds and Optimal Analysis of Dynamic Single Molecule Measurements
2004
The tertiary structure of group II introns: implications for biological function and evolution
2010
Bridging Conformational Dynamics and Function Using Single-Molecule Spectroscopy
2006
CdSe nanocrystal based chem-/bio- sensors
2007 StandoutNobel
A short guide for molecular dynamics simulations of RNA systems
2008
Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations
2004
Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM
2009 StandoutNobel
Metal ions and RNA folding: a highly charged topic with a dynamic future
2005
A colloidal quantum dot spectrometer
2015 StandoutNatureNobel
Clinical, molecular, and epidemiological characterization of the SARS-CoV-2 virus and the Coronavirus Disease 2019 (COVID-19), a comprehensive literature review
2020
Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod‐Debye law
2011
Ligand‐Induced Folding of the Adenosine Deaminase A‐Riboswitch and Implications on Riboswitch Translational Control
2007
Dissecting metal ion–dependent folding and catalysis of a single DNAzyme
2007
COVID-19: consider cytokine storm syndromes and immunosuppression
2020 Standout
Compact high-quality CdSe–CdS core–shell nanocrystals with narrow emission linewidths and suppressed blinking
2013 StandoutNobel
Programmable design of orthogonal protein heterodimers
2018 StandoutNatureNobel
Controlling protein assembly on inorganic crystals through designed protein interfaces
2019 StandoutNatureNobel
A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains
2014
General acid catalysis by the hepatitis delta virus ribozyme
2005
A Simple Fluorescent Biosensor for Theophylline Based on its RNA Aptamer
2006
A novel strategy for selection of allosteric ribozymes yields RiboReporterTM sensors for caffeine and aspartame
2004
Real-time observation of DNA recognition and rejection by the RNA-guided endonuclease Cas9
2016 StandoutNobel
New tools provide a second look at HDV ribozyme structure, dynamics and cleavage
2014 StandoutNobel
Catalytic roles for proton transfer and protonation in ribozymes
2003
Structural Dynamics of Precursor and Product of the RNA Enzyme from the Hepatitis Delta Virus as Revealed by Molecular Dynamics Simulations
2005
Functional Nucleic Acid Sensors
2009 Standout
The Structure of a Transcribing T7 RNA Polymerase in Transition from Initiation to Elongation
2008 StandoutScienceNobel
Structural characterization of mRNA-tRNA translocation intermediates
2012 StandoutNobel
Single-molecule biophysics: at the interface of biology, physics and chemistry
2007
The transition state for formation of the peptide bond in the ribosome
2006 StandoutNobel
Identification of DNA cleavage- and recombination-specific hnRNP cofactors for activation-induced cytidine deaminase
2015 StandoutNobel
Spectroscopic Rationale for Efficient Stimulated-Emission Depletion Microscopy Fluorophores
2010 StandoutNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Eukaryotic DNA Replication Fork
2017
Clustering to identify RNA conformations constrained by secondary structure
2011 StandoutNobel
Surfaces and Orientations: Much to FRET about?
2005
Gold Nanoparticles in Chemical and Biological Sensing
2012 Standout
Structural Confirmation of a Bent and Open Model for the Initiation Complex of T7 RNA Polymerase
2007
Riboswitches: Emerging Themes in RNA Structure and Function
2008
RNA FOLDING DURING TRANSCRIPTION
2006
Functional diversity of the hnRNPs: past, present and perspectives
2010
Calmodulin, Conformational States, and Calcium Signaling. A Single-Molecule Perspective
2006
RNA Scanning of a Molecular Machine with a Built-in Ruler
2016 StandoutNobel
Single-molecule spectroscopy reveals photosynthetic LH2 complexes switch between emissive states
2013 StandoutNobel
New directions in single-molecule imaging and analysis
2007 StandoutNobel
Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling
2020 StandoutNobel
Surface Immobilization of Catalytic Beacons Based on Ratiometric Fluorescent DNAzyme Sensors: A Systematic Study
2007
Redox cycling and kinetic analysis of single molecules of solution-phase nitrite reductase
2011 StandoutNobel
Cryoelectron microscopy structures of the ribosome complex in intermediate states during tRNA translocation
2011 StandoutNobel
Core/Shell Nanoparticles: Classes, Properties, Synthesis Mechanisms, Characterization, and Applications
2011 Standout
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
2016 StandoutNobel
General Base Catalysis for Cleavage by the Active-Site Cytosine of the Hepatitis Delta Virus Ribozyme: QM/MM Calculations Establish Chemical Feasibility
2008
Fluctuations of Transfer RNAs between Classical and Hybrid States
2007 Nobel
Quantum dot/antibody conjugates for in vivo cytometric imaging in mice
2015 StandoutNobel
Metal-Dependent Global Folding and Activity of the 8-17 DNAzyme Studied by Fluorescence Resonance Energy Transfer
2007
Reconfigurable asymmetric protein assemblies through implicit negative design
2022 StandoutScienceNobel
Functional requirements of AID’s higher order structures and their interaction with RNA-binding proteins
2016 StandoutNobel
De novo design of protein logic gates
2020 StandoutScienceNobel
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Works of David Rueda being referenced
Single-molecule enzymology of RNA: Essential functional groups impact catalysis from a distance
2004
RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression
2010
Live cell imaging of single RNA molecules with fluorogenic Mango II arrays
2020
Single-stranded DNA Scanning and Deamination by APOBEC3G Cytidine Deaminase at Single Molecule Resolution
2012
DNA stretching induces Cas9 off-target activity
2019
Exploring RNA folding one molecule at a time
2008
Single-molecule analysis of Mss116-mediated group II intron folding
2010 Nature
Fluorescent Energy Transfer Readout of an Aptazyme-Based Biosensor
2006
Single-molecule microscopy reveals new insights into nucleotide selection by DNA polymerase I
2012
Focus on function: Single molecule RNA enzymology
2007
Cryo-EM structures of the eukaryotic replicative helicase bound to a translocation substrate
2016
In the fluorescent spotlight: Global and local conformational changes of small catalytic RNAs
2002
A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage
2002
Catalytic Core Structure of the trans-Acting HDV Ribozyme Is Subtly Influenced by Sequence Variation Outside the Core
2006
Single-molecule studies of group II intron ribozymes
2008
Local Conformational Changes in the Catalytic Core of the Trans-Acting Hepatitis Delta Virus Ribozyme Accompany Catalysis
2002
Single-molecule transition-state analysis of RNA folding
2003
Trans-Acting Hepatitis Delta Virus Ribozyme: Catalytic Core and Global Structure Are Dependent on the 5‘ Substrate Sequence
2003
Diffusely Bound Mg2+ Ions Slightly Reorient Stems I and II of the Hammerhead Ribozyme To Increase the Probability of Formation of the Catalytic Core
2003