Citation Impact
Citing Papers
The Sequence Alignment/Map format and SAMtools
2009 Standout
STAR: ultrafast universal RNA-seq aligner
2012 Standout
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol
2008 StandoutNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
An Extensive Class of Small RNAs in Caenorhabditis elegans
2001 StandoutScienceNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
Discovery of tissue-specific exons using comprehensive human exon microarrays
2007
Hypoxia and intra-complex genetic suppressors rescue complex I mutants by a shared mechanism
2024 StandoutNobel
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes
2005
Global analysis of protein expression in yeast
2003 StandoutNature
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
An Olfactory Sensory Map in the Fly Brain
2000 StandoutNobel
Individual brain organoids reproducibly form cell diversity of the human cerebral cortex
2019 Nature
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
Natural Variation in the Splice Site Strength of a Clock Gene and Species-Specific Thermal Adaptation
2008
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
2010 Standout
Gene Discovery Using Computational and Microarray Analysis of Transcription in the Drosophila melanogaster Testis
2000
Deciphering the splicing code
2010 Nature
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
2009 StandoutNature
Prediction of complete gene structures in human genomic DNA
1997 Standout
DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis
2005 StandoutNature
Programmable RNA Tracking in Live Cells with CRISPR/Cas9
2016 StandoutNobel
A family of proteins related to Spätzle, the toll receptor ligand, are encoded in the Drosophila genome
2001
The Human Genome Browser at UCSC
2002 Standout
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
2005 StandoutNature
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
A Spatial Map of Olfactory Receptor Expression in the Drosophila Antenna
1999 StandoutNobel
A Tool for Analyzing and Annotating Genomic Sequences
1997
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
NAD+ Regeneration Rescues Lifespan, but Not Ataxia, in a Mouse Model of Brain Mitochondrial Complex I Dysfunction
2020
Interpolated Markov Models for Eukaryotic Gene Finding
1999
Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
2005
Understanding alternative splicing: towards a cellular code
2005
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
2010
Revealing Global Regulatory Features of Mammalian Alternative Splicing Using a Quantitative Microarray Platform
2004
Revisiting the protein-coding gene catalog ofDrosophila melanogasterusing 12 fly genomes
2007
Sequence, Structure, and Evolution of a Complete Human Olfactory Receptor Gene Cluster
2000
The immune response of Drosophila
2003 StandoutNatureNobel
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
2012
A molecular cell atlas of the human lung from single-cell RNA sequencing
2020 Nature
Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae–C. elegans Genomic Alignment
2000
A Chemosensory Gene Family Encoding Candidate Gustatory and Olfactory Receptors in Drosophila
2001 StandoutNobel
Protein structure prediction and analysis using the Robetta server
2004 StandoutNobel
An integrated computational pipeline and database to support whole-genome sequence annotation
2002 StandoutNobel
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks
2020 StandoutNobel
HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins 1 1Edited by J. Thornton
2000 StandoutNobel
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
2007 Standout
A question of size: the eukaryotic proteome and the problems in defining it
2002
Microarray Analysis and Organization of Circadian Gene Expression in Drosophila
2001 StandoutNobel
Regulation of chromatin structure by site-specific histone H3 methyltransferases
2000 StandoutNature
Quantitative Models of the Mechanisms That Control Genome-Wide Patterns of Transcription Factor Binding during Early Drosophila Development
2011
Comprehensive Integration of Single-Cell Data
2019 Standout
RNA Bind-n-Seq: Quantitative Assessment of the Sequence and Structural Binding Specificity of RNA Binding Proteins
2014 Nobel
Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila
2005
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
Computational Inference of Homologous Gene Structures in the Human Genome
2001
Profile hidden Markov models.
1998 Standout
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
The map-based sequence of the rice genome
2005 StandoutNature
Alternative Splicing: New Insights from Global Analyses
2006
A hidden Markov model for predicting transmembrane helices in protein sequences.
1998 Standout
Transcriptional neoteny in the human brain
2009 StandoutNobel
Cancer-associated regulation of alternative splicing
2009
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
2004 Standout
Functional mapping of disease susceptibility loci using cell biology
2006 StandoutNobel
Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays
2003 Science
Genomic analysis of orthologous mouse and human olfactory receptor loci
2001 StandoutNobel
BEDTools: a flexible suite of utilities for comparing genomic features
2010 Standout
Coupled prediction of protein secondary and tertiary structure
2003 StandoutNobel
Protein structure prediction for the male-specific region of the human Y chromosome
2004 StandoutNobel
Circadian neuron feedback controls the Drosophila sleep–activity profile
2016 StandoutNatureNobel
Works of David Kulp being referenced
Genie—Gene Finding in Drosophila melanogaster
2000
Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays
2006
Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain
2018
Gene structure-based splice variant deconvolution using a microarry platform
2003
Improved Splice Site Detection in Genie
1997
Probe selection for high-density oligonucleotide arrays
2003
Improved splice site detection in Genie
1997
A generalized hidden Markov model for the recognition of human genes in DNA.
1996
Integrating database homology in a probabilistic gene structure model.
1997
NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis
2004