Citation Impact
Citing Papers
Coevolutionary signals across protein lineages help capture multiple protein conformations
2013
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
A monomeric G protein-coupled receptor isolated in a high-density lipoprotein particle efficiently activates its G protein
2007 StandoutNobel
Structures of the CXCR4 Chemokine GPCR with Small-Molecule and Cyclic Peptide Antagonists
2010 StandoutScience
High-Resolution Crystal Structure of an Engineered Human β 2 -Adrenergic G Protein–Coupled Receptor
2007 StandoutScienceNobel
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
Crosstalk in G protein-coupled receptors: Changes at the transmembrane homodimer interface determine activation
2005
Improved protein structure prediction using predicted interresidue orientations
2020 StandoutNobel
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality
2020 StandoutNobel
From residue coevolution to protein conformational ensembles and functional dynamics
2015
A bacterium that degrades and assimilates poly(ethylene terephthalate)
2016 StandoutScience
MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins
2014
Predicting protein–protein interactions in the context of protein evolution
2009
Hierarchical design of pseudosymmetric protein nanocages
2024 StandoutNatureNobel
Computational design of soluble and functional membrane protein analogues
2024 StandoutNatureNobel
A computational framework for boosting confidence in high-throughput protein-protein interaction datasets
2012
FreeContact: fast and free software for protein contact prediction from residue co-evolution
2014
The EGLN-HIF O 2 -Sensing System: Multiple Inputs and Feedbacks
2017 StandoutNobel
Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology
2017
Hetero-oligomerization of CCR2, CCR5, and CXCR4 and the Protean Effects of “Selective” Antagonists
2009
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
2017
Structural Basis of the Interaction between Chemokine Stromal Cell-derived Factor-1/CXCL12 and Its G-protein-coupled Receptor CXCR4
2009
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
De Novo Structure Prediction of Globular Proteins Aided by Sequence Variation-Derived Contacts
2014
Multistate and functional protein design using RoseTTAFold sequence space diffusion
2024 StandoutNobel
CoinFold: a web server for protein contact prediction and contact-assisted protein folding
2016
Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains
2020 StandoutNobel
A large-scale comparative assessment of methods for residue–residue contact prediction
2016
Learning the protein language: Evolution, structure, and function
2021
Crystal structure of the human β2 adrenergic G-protein-coupled receptor
2007 StandoutNatureNobel
Structure of the Type VI Secretion System Contractile Sheath
2015 StandoutNobel
CS-ROSETTA
2018
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations
2013 StandoutNobel
Protein–protein interaction and quaternary structure
2008
How advancement in biological network analysis methods empowers proteomics
2012
Predicting protein function from sequence and structure
2007
Ligand-regulated oligomerization of β2-adrenoceptors in a model lipid bilayer
2009 StandoutNobel
Accurate design of co-assembling multi-component protein nanomaterials
2014 StandoutNatureNobel
Bioluminescence Resonance Energy Transfer Reveals Ligand-induced Conformational Changes in CXCR4 Homo- and Heterodimers
2005
Chemical shift-based methods in NMR structure determination
2018
Structure Modeling of All Identified G Protein–Coupled Receptors in the Human Genome
2006
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis
2018 StandoutNobel
Engineering allostery
2014
Increasingly accurate dynamic molecular models of G-protein coupled receptor oligomers: Panacea or Pandora's box for novel drug discovery?
2009
VHL-Regulated MiR-204 Suppresses Tumor Growth through Inhibition of LC3B-Mediated Autophagy in Renal Clear Cell Carcinoma
2012
Hypoxia drives glucose transporter 3 expression through hypoxia-inducible transcription factor (HIF)–mediated induction of the long noncoding RNA NICI
2019 StandoutNobel
Fluorescence Resonance Energy Transfer Imaging Reveals that Chemokine-Binding Modulates Heterodimers of CXCR4 and CCR5 Receptors
2008
Improved protein structure refinement guided by deep learning based accuracy estimation
2021 StandoutNobel
Dimerization of chemokine receptors in living cells: key to receptor function and novel targets for therapy
2008
Evidence for Negative Binding Cooperativity within CCR5-CCR2b Heterodimers
2004
The coming of age of de novo protein design
2016 StandoutNatureNobel
Predicting the functional impact of protein mutations: application to cancer genomics
2011
2016 update of the PRIDE database and its related tools
2015 Standout
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
De novo design of bioactive protein switches
2019 StandoutNatureNobel
Regulatory Effects of microRNA-92 (miR-92) on VHL Gene Expression and the Hypoxic Activation of miR-210 in Clear Cell Renal Cell Carcinoma
2011
Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
2013 Standout
Homodimerization of the β2-Adrenergic Receptor as a Prerequisite for Cell Surface Targeting
2004
Crystal structure of the µ-opioid receptor bound to a morphinan antagonist
2012 StandoutNatureNobel
Predicting functional effect of missense variants using graph attention neural networks
2022
Emerging role of homo- and heterodimerization in G-protein-coupled receptor biosynthesis and maturation
2005
miR-10a overexpression is associated with NPM1 mutations and MDM4 downregulation in intermediate-risk acute myeloid leukemia
2011
Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
2007
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
miR‐210: More than a silent player in hypoxia
2011
A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
2011
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Protein structure determination by combining sparse NMR data with evolutionary couplings
2015
Proteomic approaches to uncovering virus–host protein interactions during the progression of viral infection
2016
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
Uncoupling hypoxia signaling from oxygen sensing in the liver results in hypoketotic hypoglycemic death
2011
HypoxamiRs and Cancer: From Biology to Targeted Therapy
2013
Toward high-resolution prediction and design of transmembrane helical protein structures
2007 StandoutNobel
The structural and energetic basis for high selectivity in a high-affinity protein-protein interaction
2010 StandoutNobel
Exploring the potential of public proteomics data
2015
The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data
2012 Standout
Critical assessment of methods of protein structure prediction (CASP) — round x
2013
Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis
2015
SWISS-MODEL: homology modelling of protein structures and complexes
2018 Standout
Computational studies of Family A and Family B GPCRs
2007
Critical assessment of methods of protein structure prediction (CASP)—Round XIII
2019
Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
2013 Standout
ComplexContact: a web server for inter-protein contact prediction using deep learning
2018
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
2014 StandoutNobel
Critical assessment of methods of protein structure prediction (CASP)—Round XIV
2021
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
Structure-Function of the G Protein–Coupled Receptor Superfamily
2012
Computational Modeling Approaches to Structure−Function Analysis of G Protein-Coupled Receptors
2005
Dimerization of CXCR4 in living malignant cells: control of cell migration by a synthetic peptide that reduces homologous CXCR4 interactions
2006
Prediction of membrane protein structures with complex topologies using limited constraints
2009 StandoutNobel
Making Structural Sense of Dimerization Interfaces of Delta Opioid Receptor Homodimers
2011
Update 1 of: Computational Modeling Approaches to Structure–Function Analysis of G Protein-Coupled Receptors
2011
Large-scale determination of previously unsolved protein structures using evolutionary information
2015 StandoutNobel
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
2011 Standout
Trafficking of G Protein–Coupled Receptors
2006 StandoutNobel
Sequence co-evolution gives 3D contacts and structures of protein complexes
2014
Studying the co-evolution of protein families with the Mirrortree web server
2010
Treatment of erythropoietin deficiency in mice with systemically administered siRNA
2012 StandoutNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Protein contact prediction using metagenome sequence data and residual neural networks
2019 StandoutNobel
Works of David Juan being referenced
Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma
2010
Enhancing the prediction of protein pairings between interacting families using orthology information
2008
A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors
2005
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
2014
Identification of a MicroRNA Panel for Clear-cell Kidney Cancer
2009
Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome
2005
Prediction of Protein Interaction Based on Similarity of Phylogenetic Trees
2008
Identification of amino acid residues crucial for chemokine receptor dimerization
2004
Emerging methods in protein co-evolution
2013
Co‐evolution and co‐adaptation in protein networks
2008
Protein interactions and ligand binding: From protein subfamilies to functional specificity
2010
Spatiotemporal transcriptomic divergence across human and macaque brain development
2018 Science
High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
2008
JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures
2011