Citation Impact
Citing Papers
The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
2012 Science
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
The human splicing code reveals new insights into the genetic determinants of disease
2014 Science
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
RNA-seq differential expression studies: more sequence or more replication?
2013
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
2014
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
Genetic Influences on Brain Gene Expression in Rats Selected for Tameness and Aggression
2014 StandoutNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
2014
New genetic regulators question relevance of abundant yolk protein production in C. elegans
2015
Evidence for conserved post-transcriptional roles of unitary pseudogenes and for frequent bifunctionality of mRNAs
2012
Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
2015
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
An Expanded View of Complex Traits: From Polygenic to Omnigenic
2017 Standout
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Lineage-Specific Changes in Biomarkers in Great Apes and Humans
2015 StandoutNobel
Differential analysis of gene regulation at transcript resolution with RNA-seq
2012 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci
2018
Mitochondrial Targeting Adaptation of the Hominoid-Specific Glutamate Dehydrogenase Driven by Positive Darwinian Selection
2008
Hominoid-Specific De Novo Protein-Coding Genes Originating from Long Non-Coding RNAs
2012
A Comparison of Brain Gene Expression Levels in Domesticated and Wild Animals
2012 StandoutNobel
Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression
2012
The evolution of lncRNA repertoires and expression patterns in tetrapods
2014 Nature
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
2012
The emerging role of lncRNAs in cancer
2015 Standout
Impacts of Neanderthal-Introgressed Sequences on the Landscape of Human Gene Expression
2017
A Neanderthal Sodium Channel Increases Pain Sensitivity in Present-Day Humans
2020 StandoutNobel
O-Pair Search with MetaMorpheus for O-glycopeptide characterization
2020 StandoutNobel
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
The functional repertoires of metazoan genomes
2008
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Comparative primate genomics: emerging patterns of genome content and dynamics
2014
A microRNA program in the C. elegans hypodermis couples to intestinal mTORC2/PQM-1 signaling to modulate fat transport
2016 StandoutNobel
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Evolution to the rescue: using comparative genomics to understand long non-coding RNAs
2016
A general framework for estimating the relative pathogenicity of human genetic variants
2014 Standout
Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues
2015 StandoutNobel
The landscape of long noncoding RNAs in the human transcriptome
2015 Standout
Hypoxia drives glucose transporter 3 expression through hypoxia-inducible transcription factor (HIF)–mediated induction of the long noncoding RNA NICI
2019 StandoutNobel
Functional implications of Neandertal introgression in modern humans
2017
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
The Evolution of Milk Casein Genes from Tooth Genes before the Origin of Mammals
2011
Alternative polyadenylation of mRNA precursors
2016
Revealing the human mucinome
2022 StandoutNobel
Evolution and diversity of copy number variation in the great ape lineage
2013
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
A genome-wide map of hyper-edited RNA reveals numerous new sites
2014
Enhancer Evolution across 20 Mammalian Species
2015
Dynamics of DNA Methylation in Recent Human and Great Ape Evolution
2013
A guide to deep learning in healthcare
2018 Standout
Deep learning
2015 StandoutNatureNobel
Primate iPS cells as tools for evolutionary analyses
2014 StandoutNobel
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Detecting differential usage of exons from RNA-seq data
2012
The Human Condition—A Molecular Approach
2014 StandoutNobel
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability
2018 Nature
Searching the Evolutionary Origin of Epithelial Mucus Protein Components—Mucins and FCGBP
2016
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
2013 Standout
NONCODE 2016: an informative and valuable data source of long non-coding RNAs
2015
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Human-Specific Transcriptional Networks in the Brain
2012
The evolution of gene duplications: classifying and distinguishing between models
2010
Organoid single-cell genomic atlas uncovers human-specific features of brain development
2019 StandoutNatureNobel
N6-methyladenosine-dependent RNA structural switches regulate RNA–protein interactions
2015 StandoutNature
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Transcriptional response to hepatitis C virus infection and interferon‐alpha treatment in the human liver
2017
CADD: predicting the deleteriousness of variants throughout the human genome
2018 Standout
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
2018 Standout
Detecting Natural Selection in Genomic Data
2013
Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures
2013 Science
lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs
2014
Drift and conservation of differential exon usage across tissues in primate species
2013
Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness
2014 StandoutNobel
Analysis of Candidate Genes for Lineage-Specific Expression Changes in Humans and Primates
2014 StandoutNobel
Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan
2014 StandoutScienceNobel
Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development
2016 StandoutNobel
A circadian gene expression atlas in mammals: Implications for biology and medicine
2014 Standout
Deep learning of the tissue-regulated splicing code
2014
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 Standout
Interpreting non-coding variation in complex disease genetics
2012
Genetic Variation in Pan Species Is Shaped by Demographic History and Harbors Lineage-Specific Functions
2019
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne
2016 StandoutNobel
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Works of David Brawand being referenced
Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
2008
Loss of Egg Yolk Genes in Mammals and the Origin of Lactation and Placentation
2008
Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis
2013
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel