Standout Papers

Predictive functional profiling of microbial communities using 16S rRNA marker gene ... 2011 2026 2016 2021 7.0k
  1. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences (2013)
    Morgan G. I. Langille, Jesse Zaneveld et al. Nature Biotechnology
  2. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea (2011)
    Daniel McDonald, Morgan N. Price et al. The ISME Journal
  3. Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns (2017)
    Amnon Amir, Daniel McDonald et al. mSystems
  4. Dynamics of the human gut microbiome in inflammatory bowel disease (2017)
    Jonas Halfvarson, Colin Brislawn et al. Nature Microbiology
  5. Strains, functions and dynamics in the expanded Human Microbiome Project (2017)
    Jason Lloyd‐Price, Anup Mahurkar et al. Nature
  6. GABA-modulating bacteria of the human gut microbiota (2018)
    Philip Strandwitz, Ki Hyun Kim et al. Nature Microbiology
  7. The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012)
    Daniel McDonald, José C. Clemente et al. GigaScience
  8. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences (2014)
    Jai Ram Rideout, Yan He et al. PeerJ
  9. Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information (2018)
    Stefan Janssen, Daniel McDonald et al. mSystems
  10. QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data (2020)
    Mehrbod Estaki, Lingjing Jiang et al. Current Protocols in Bioinformatics
  11. Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults (2019)
    Jacobo de la Cuesta‐Zuluaga, Scott T. Kelley et al. mSystems
  12. High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing (2021)
    Søren Michael Karst, Ryan Ziels et al. Nature Methods

Immediate Impact

46 from Science/Nature 129 standout
Sub-graph 1 of 13

Citing Papers

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2024 Standout
Gut microbiota carcinogen metabolism causes distal tissue tumours
2024 StandoutNature
1 intermediate paper

Works of Daniel McDonald being referenced

Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
2018 Standout
Strains, functions and dynamics in the expanded Human Microbiome Project
2017 StandoutNature
and 1 more

Author Peers

Author Last Decade Papers Cites
Daniel McDonald 12997 2938 4499 112 22.1k
Levi Waldron 12914 2662 2468 89 20.9k
Jacques Izard 11431 3279 2742 60 20.0k
Todd Z. DeSantis 11340 2115 6206 51 21.2k
Robert G. Beiko 9209 1591 4091 100 16.0k
William A. Walters 11387 3205 4037 30 19.3k
Janet Jansson 15272 2500 7452 222 27.5k
Michael Rosen 9874 1711 6496 64 23.9k
Jeroen Raes 18184 4161 4565 218 26.5k
Dan Knights 19049 5349 4106 122 28.6k
Omry Koren 11229 3455 2640 144 19.4k

All Works

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2026