Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
HTSeq—a Python framework to work with high-throughput sequencing data
2014 Standout
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
A Novel Germline Variant in CSF3R Reduces N-Glycosylation and Exerts Potent Oncogenic Effects in Leukemia
2018 StandoutNobel
The Colony-Stimulating Factor 3 Receptor T640N Mutation Is Oncogenic, Sensitive to JAK Inhibition, and Mimics T618I
2015
voom: precision weights unlock linear model analysis tools for RNA-seq read counts
2014 Standout
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets
2011
Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer
2019 StandoutNobel
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
A comparison of methods for differential expression analysis of RNA-seq data
2013
Modeling pathogenesis of emergent and pre-emergent human coronaviruses in mice
2018
2018
A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons
2017 StandoutNobel
Genome-wide Analysis of Host-Plasmodium yoelii Interactions Reveals Regulators of the Type I Interferon Response
2015
Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer
2014 Nature
Merkel Cells Activate Sensory Neural Pathways through Adrenergic Synapses
2018 StandoutNobel
Catalytically Active Cas9 Mediates Transcriptional Interference to Facilitate Bacterial Virulence
2019 StandoutNobel
Beta-catenin inhibits melanocyte migration but induces melanoma metastasis
2012
YAP1 Exerts Its Transcriptional Control via TEAD-Mediated Activation of Enhancers
2015
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Differential analysis of RNA-seq incorporating quantification uncertainty
2017
An overview on CALR and CSF3R mutations and a proposal for revision of WHO diagnostic criteria for myeloproliferative neoplasms
2014
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
Identifying Host Factors That Regulate Viral Infection
2012
Identification of endoribonuclease specific cleavage positions reveals novel targets of RNase III inStreptococcus pyogenes
2017 StandoutNobel
Neutrophilic leukocytosis in advanced stage polycythemia vera: hematopathologic features and prognostic implications
2015
Enhanced MAPK signaling is essential for CSF3R-induced leukemia
2016
WNT signalling pathways as therapeutic targets in cancer
2012 Standout
The emerging role of lncRNAs in cancer
2015 Standout
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
2019 Standout
Removing technical variability in RNA-seq data using conditional quantile normalization
2012
Structural basis of cytokine-mediated activation of ALK family receptors
2021 Nature
Improving de novo protein binder design with deep learning
2023 StandoutNobel
CRISPR–Cas9 genome engineering of primary CD4+ T cells for the interrogation of HIV–host factor interactions
2018 StandoutNobel
GSVA: gene set variation analysis for microarray and RNA-Seq data
2013 Standout
The changing landscape of atherosclerosis
2021 StandoutNature
RNA-Seq and Expression Arrays: Selection Guidelines for Genome-Wide Expression Profiling
2018
Ligand Independence of the T618I Mutation in the Colony-stimulating Factor 3 Receptor (CSF3R) Protein Results from Loss of O-Linked Glycosylation and Increased Receptor Dimerization
2014
Hippo Pathway in Organ Size Control, Tissue Homeostasis, and Cancer
2015 Standout
Salmon provides fast and bias-aware quantification of transcript expression
2017 Standout
CSF3R T618I is a highly prevalent and specific mutation in chronic neutrophilic leukemia
2013
Regulation of mature T cell responses by the Wnt signaling pathway
2012
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
2016 Standout
Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells
2014
An International MDS/MPN Working Group's perspective and recommendations on molecular pathogenesis, diagnosis and clinical characterization of myelodysplastic/myeloproliferative neoplasms
2015
Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain
2020 StandoutNobel
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
2013
The clinical impact of glycobiology: targeting selectins, Siglecs and mammalian glycans
2021 StandoutNobel
Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer
2015 StandoutNobel
limma powers differential expression analyses for RNA-sequencing and microarray studies
2015 Standout
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Long-Term Expansion of Functional Mouse and Human Hepatocytes as 3D Organoids
2018 StandoutNobel
Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy
2017 Standout
Power analysis and sample size estimation for RNA-Seq differential expression
2014
Comprehensive Integration of Single-Cell Data
2019 Standout
Mechanism of β-Catenin-mediated Transcriptional Regulation of Epidermal Growth Factor Receptor Expression in Glycogen Synthase Kinase 3 β-inactivated Prostate Cancer Cells
2012
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities
2017 Standout
A Switch from Canonical to Noncanonical Wnt Signaling Mediates Drug Resistance in Colon Cancer Cells
2011
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19
2020 Standout
A Fibrosis‐Independent Hepatic Transcriptomic Signature Identifies Drivers of Disease Progression in Primary Sclerosing Cholangitis
2020 StandoutNobel
RTP4 inhibits IFN-I response and enhances experimental cerebral malaria and neuropathology
2020 StandoutNobel
ASXL1 mutations are frequent and prognostically detrimental in CSF3R‐mutated chronic neutrophilic leukemia
2015
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
2012 Standout
A long noncoding RNA connects c-Myc to tumor metabolism
2014
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 Standout
Chemo-genomic interrogation of CEBPA mutated AML reveals recurrent CSF3R mutations and subgroup sensitivity to JAK inhibitors
2016
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
2022 Standout
Wound Healing: A Cellular Perspective
2018 Standout
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
2018 Standout
Genomics of chronic neutrophilic leukemia
2016
Wnt-induced transcriptional activation is exclusively mediated by TCF/LEF
2014
Clonal hematopoiesis of indeterminate potential and its distinction from myelodysplastic syndromes
2015 Standout
Advantages of RNA‐seq compared to RNA microarrays for transcriptome profiling of anterior cruciate ligament tears
2017
PROPER: comprehensive power evaluation for differential expression using RNA-seq
2014
Comparison of software packages for detecting differential expression in RNA-seq studies
2013
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia
2016 Standout
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Works of Daniel Bottomly being referenced
Therapeutically Targetable ALK Mutations in Leukemia
2015
Identification of β-catenin binding regions in colon cancer cells using ChIP-Seq
2010
OncogenicCSF3RMutations in Chronic Neutrophilic Leukemia and Atypical CML
2013
Androgen Receptor Promotes Ligand-Independent Prostate Cancer Progression through c-Myc Upregulation
2013
Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays
2011
Expression Quantitative Trait Loci for Extreme Host Response to Influenza A in Pre-Collaborative Cross Mice
2012