Citation Impact
Citing Papers
Identifying biologically relevant differences between metagenomic communities
2010
RNA-Guided Human Genome Engineering via Cas9
2013 StandoutScience
Rapid detection of Mycobacterium tuberculosis in sputum with a solvatochromic trehalose probe
2018 StandoutNobel
VSEARCH: a versatile open source tool for metagenomics
2016 Standout
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
2010
Human microbiome: an academic update on human body site specific surveillance and its possible role
2020
Exploring the viral world through metagenomics
2011
The SKG model of spondyloarthritis
2017
A Primer on Metagenomics
2010
Rheumatoid arthritis
2016 Standout
Synovial Tissue Inflammation Mediated by Autoimmune T Cells
2019 StandoutNobel
Cystic fibrosis
2016 Standout
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
Human Genetics Shape the Gut Microbiome
2014 Standout
The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations
2012
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Lethal Mutagenesis of Hepatitis C Virus Induced by Favipiravir
2016 StandoutNobel
Microbial culturomics: paradigm shift in the human gut microbiome study
2012
Controlling and enhancing CRISPR systems
2020 StandoutNobel
The respiratory microbiome: an underappreciated player in the human response to inhaled pollutants?
2016
Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
2018 Standout
The human gut virome: Inter-individual variation and dynamic response to diet
2011
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
2012 Standout
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Role of the Microbiota in Immunity and Inflammation
2014 Standout
Metagenomic biomarker discovery and explanation
2011 Standout
Models of Lung Transplant Research: a consensus statement from the National Heart, Lung, and Blood Institute workshop
2017
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
A comparison of tools for the simulation of genomic next-generation sequencing data
2016
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
2013
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
2013 Standout
Biofilms: an emergent form of bacterial life
2016 Standout
The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites
2012
Diet–microbiota interactions as moderators of human metabolism
2016 StandoutNature
Immunopathology of multiple sclerosis
2015 Standout
Crohn's disease
2016 Standout
The Impact of the Gut Microbiota on Human Health: An Integrative View
2012 Standout
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
2017 Standout
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Sequencing and beyond: integrating molecular 'omics' for microbial community profiling
2015
Current understanding of the human microbiome
2018 Standout
The microbiome of the lung
2012
Experimental and analytical tools for studying the human microbiome
2011
Development and Applications of CRISPR-Cas9 for Genome Engineering
2014 Standout
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
2012
Bacteria–phage coevolution as a driver of ecological and evolutionary processes in microbial communities
2014
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
2016
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
2013 Standout
Gut microbiota, metabolites and host immunity
2016 Standout
MICCA: a complete and accurate software for taxonomic profiling of metagenomic data
2015
The Virome in Mammalian Physiology and Disease
2014
The Biology of CRISPR-Cas: Backward and Forward
2018 StandoutNobel
Urinary tract infections: epidemiology, mechanisms of infection and treatment options
2015 Standout
Going viral: next-generation sequencing applied to phage populations in the human gut
2012
Topographic diversity of fungal and bacterial communities in human skin
2013 StandoutNature
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
2017 Standout
Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
2011
Cyanobacterial blooms
2018 Standout
The human microbiome: at the interface of health and disease
2012 Standout
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
STAMP: statistical analysis of taxonomic and functional profiles
2014 Standout
Real Time Metagenomics: Using k-mers to annotate metagenomes
2012
Diversity and Ecology of Viruses in Hyperarid Desert Soils
2015
Double-slit photoelectron interference in strong-field ionization of the neon dimer
2019 Standout
Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease
2015
Microbial Metagenomics: Beyond the Genome
2010
Computational meta'omics for microbial community studies
2013
Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm
2013
Reefs under Siege—the Rise, Putative Drivers, and Consequences of Benthic Cyanobacterial Mats
2018
Host-specific induction of Escherichia coli fitness genes during human urinary tract infection
2014
Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
2013
Healthy human gut phageome
2016
Temperature, by Controlling Growth Rate, Regulates CRISPR-Cas Activity in Pseudomonas aeruginosa
2018
Inference with viral quasispecies diversity indices: clonal and NGS approaches
2014
Serum Metabolomics Analysis of Asthma in Different Inflammatory Phenotypes: A Cross-Sectional Study in Northeast China
2018
Quality control and preprocessing of metagenomic datasets
2011 Standout
CRISPR-Cas Systems
2012
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Metagenomics of the Human Body
2010
Gnotobiotic mouse model of phage–bacterial host dynamics in the human gut
2013
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
2012 Standout
Metagenomics and the Human Virome in Asymptomatic Individuals
2016
Endothelial Hypoxia-Inducible Factor-2α Is Required for the Maintenance of Airway Microvasculature
2019 StandoutNobel
Review: Microbiome in Inflammatory Arthritis and Human Rheumatic Diseases
2015
The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota
2017 Standout
PBSIM: PacBio reads simulator—toward accurate genome assembly
2012
The Human Microbiome: Our Second Genome
2012
Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
2017
Plastic and Human Health: A Micro Issue?
2017 Standout
A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane
2013 Standout
Impaired T cell receptor signaling and development of T cell–mediated autoimmune arthritis
2020 StandoutNobel
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
2021 Standout
Works of Dana Willner being referenced
Brief Report: Intestinal Dysbiosis in Ankylosing Spondylitis
2014
Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
2012
From deep sequencing to viral tagging: Recent advances in viral metagenomics
2013
Broad Surveys of DNA Viral Diversity Obtained through Viral Metagenomics of Mosquitoes
2011
Metagenomic signatures of 86 microbial and viral metagenomes
2009
Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
2009
Airway dysbiosis:Haemophilus influenzaeandTropherymain poorly controlled asthma
2015
Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples
2012
Reestablishment of Recipient-associated Microbiota in the Lung Allograft Is Linked to Reduced Risk of Bronchiolitis Obliterans Syndrome
2013
Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung
2011
Single Clinical Isolates from Acute Uncomplicated Urinary Tract Infections Are Representative of Dominant In Situ Populations
2014
Top‐down control of microbial activity and biomass in an Arctic soil ecosystem
2009
Grinder: a versatile amplicon and shotgun sequence simulator
2012
Black reefs: iron-induced phase shifts on coral reefs
2011
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
2010
Is diversification of the endometrial microbiome significant for reproductive success?
2015
Spatial distribution of microbial communities in the cystic fibrosis lung
2011