Citation Impact
Citing Papers
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
2010 Standout
A survey of best practices for RNA-seq data analysis
2016 Standout
VENN, a tool for titrating sequence conservation onto protein structures
2009
The biogeography of mitochondrial and nuclear discordance in animals
2012 Standout
AUGUSTUS: ab initio prediction of alternative transcripts
2006 Standout
Chapter 2 Fasciola, Lymnaeids and Human Fascioliasis, with a Global Overview on Disease Transmission, Epidemiology, Evolutionary Genetics, Molecular Epidemiology and Control
2009 Standout
Ultrafast Approximation for Phylogenetic Bootstrap
2013 Standout
Populations, hybrids and the systematic concepts of species and subspecies in Chagas disease triatomine vectors inferred from nuclear ribosomal and mitochondrial DNA
2008
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
2016 Standout
WRKY transcription factors
2010 Standout
ProtTest: selection of best-fit models of protein evolution
2005 Standout
Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis
2018 StandoutNobel
Efficient Methods for Estimating Amino Acid Replacement Rates
2006
DIALIGN: multiple DNA and protein sequence alignment at BiBiServ
2004
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
2016 Standout
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
2002 Standout
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids
2010 Standout
An Improved General Amino Acid Replacement Matrix
2008 Standout
Testing Substitution Models Within a Phylogenetic Tree
2003
Different Versions of the Dayhoff Rate Matrix
2004
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
2016
ModelFinder: fast model selection for accurate phylogenetic estimates
2017 Standout
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
2018 Standout
A Transition Probability Model for Amino Acid Substitutions from Blocks
2003
Modeling Amino Acid Replacement
2000
A mitochondrial genome phylogeny of Diptera: whole genome sequence data accurately resolve relationships over broad timescales with high precision
2006 Standout
Avl9p, a Member of a Novel Protein Superfamily, Functions in the Late Secretory Pathway
2007 StandoutNobel
Computational Molecular Evolution
2006 Standout
UFBoot2: Improving the Ultrafast Bootstrap Approximation
2017 Standout
phangorn: phylogenetic analysis in R
2010 Standout
A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
2011
The Population Biology of Mitochondrial DNA and Its Phylogenetic Implications
2005
Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
2011
Works of Claudine Devauchelle being referenced
Automatic detection of anchor points for multiple sequence alignment
2010
Comparing sequences without using alignments: application to HIV/SIV subtyping
2007
Rate Matrices for Analyzing Large Families of Protein Sequences
2001