Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
RNA-seq differential expression studies: more sequence or more replication?
2013
Mouse models of acute and chronic hepacivirus infection
2017 StandoutScienceNobel
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
fastp: an ultra-fast all-in-one FASTQ preprocessor
2018 Standout
A survey of best practices for RNA-seq data analysis
2016 Standout
Wnt/β-catenin signalling: function, biological mechanisms, and therapeutic opportunities
2022 Standout
CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing
2017 StandoutNobel
Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer
2019 StandoutNobel
Hypoxia and intra-complex genetic suppressors rescue complex I mutants by a shared mechanism
2024 StandoutNobel
dCas9 fusion to computer-designed PRC2 inhibitor reveals functional TATA box in distal promoter region
2022 StandoutNobel
An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers
2013
Fast and accurate protein structure search with Foldseek
2023 Standout
Identification of Multiple Mechanisms of Resistance to Vemurafenib in a Patient with BRAFV600E-Mutated Cutaneous Melanoma Successfully Rechallenged after Progression
2013
The AASM Scoring Manual Four Years Later
2012
Rules for Scoring Respiratory Events in Sleep: Update of the 2007 AASM Manual for the Scoring of Sleep and Associated Events
2012 Standout
The RNA Binding Protein Quaking Regulates Formation of circRNAs
2015 Standout
Resolving the complexity of the human genome using single-molecule sequencing
2014 Nature
Testicular Germ-Cell Cancer
1997 Standout
A view on drug resistance in cancer
2019 StandoutNature
Can we safely target the WNT pathway?
2014
Hepatocellular carcinoma
2016 Standout
Advances in molecular classification and precision oncology in hepatocellular carcinoma
2020
Epigenetic modulators, modifiers and mediators in cancer aetiology and progression
2016
Role of Oncogenes and Tumor-suppressor Genes in Carcinogenesis: A Review
2020 Standout
Wnt signaling in cancer
2016 Standout
The Many Roles of BAF (mSWI/SNF) and PBAF Complexes in Cancer
2016
Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction
2015
Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future
2017 Standout
Hallmarks of aging: An expanding universe
2023 Standout
Myeloid-derived suppressor cells in the era of increasing myeloid cell diversity
2021 Standout
Estimation of the global prevalence and burden of obstructive sleep apnoea: a literature-based analysis
2019 Standout
Hepatocellular carcinoma
2021 Standout
Toxic Mechanisms of Five Heavy Metals: Mercury, Lead, Chromium, Cadmium, and Arsenic
2021 Standout
Cancer stem cells revisited
2017 Standout
The role of retrotransposable elements in ageing and age-associated diseases
2021 Nature
Integrating single-cell transcriptomic data across different conditions, technologies, and species
2018 Standout
Current and future perspectives of liquid biopsies in genomics-driven oncology
2018 Standout
mRNA vaccines for infectious diseases: principles, delivery and clinical translation
2021 StandoutNobel
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
2013
Using ERDS to Infer Copy-Number Variants in High-Coverage Genomes
2012
PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data
2013
MicroRNA biogenesis pathways in cancer
2015 Standout
Somatic mutations in DROSHA and DICER1 impair microRNA biogenesis through distinct mechanisms in Wilms tumours
2014
Liquid biopsies come of age: towards implementation of circulating tumour DNA
2017 Standout
Pathogenic Mechanisms of Somatic Mutation and Genome Mosaicism in Aging
2020
MicroRNA therapeutics: towards a new era for the management of cancer and other diseases
2017 Standout
The evolving tumor microenvironment: From cancer initiation to metastatic outgrowth
2023 Standout
Extremely High Mutation Rate of HIV-1 In Vivo
2015
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain
2012
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Evidence for APOBEC3B mutagenesis in multiple human cancers
2013
Integrated digital error suppression for improved detection of circulating tumor DNA
2016
The molecular landscape of head and neck cancer
2018 Standout
Power analysis and sample size estimation for RNA-Seq differential expression
2014
Host–Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes
2015
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
TIGRA: A targeted iterative graph routing assembler for breakpoint assembly
2013
Unravelling tumour heterogeneity by single-cell profiling of circulating tumour cells
2019
22q11.2 deletion syndrome
2015 Standout
Maftools: efficient and comprehensive analysis of somatic variants in cancer
2018 Standout
Deregulation of neuronal miRNAs induced by amyloid-β or TAU pathology
2018
Characterization of background noise in capture-based targeted sequencing data
2017
Tumour heterogeneity and resistance to cancer therapies
2017 Standout
The genomics of oxidative DNA damage, repair, and resulting mutagenesis
2020
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities
2017 Standout
Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package
2015
Identification of copy number variants in whole-genome data using Reference Coverage Profiles
2015 StandoutNobel
Age-Associated mRNA and miRNA Expression Changes in the Blood-Brain Barrier
2019 StandoutNobel
subSeq: Determining Appropriate Sequencing Depth Through Efficient Read Subsampling
2014
The MAPK pathway across different malignancies: A new perspective
2014 Standout
Durable tumor regression in genetically altered malignant rhabdoid tumors by inhibition of methyltransferase EZH2
2013
Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL −/− clear cell renal carcinoma
2017 StandoutNobel
Molecular Pathways: SWI/SNF (BAF) Complexes Are Frequently Mutated in Cancer—Mechanisms and Potential Therapeutic Insights
2013
Active Transposition in Genomes
2012
Versatile genome assembly evaluation with QUAST-LG
2018
Cellular survival over genomic perfection
2019 Science
Cancer: Evolution Within a Lifetime
2014
Sequence Artifacts in DNA from Formalin-Fixed Tissues: Causes and Strategies for Minimization
2014
Hypermutation in human cancer genomes: footprints and mechanisms
2014
The Chemistry of Reactive Oxygen Species (ROS) Revisited: Outlining Their Role in Biological Macromolecules (DNA, Lipids and Proteins) and Induced Pathologies
2021 Standout
Combination therapy in combating cancer
2017 Standout
Early loss of mitochondrial complex I and rewiring of glutathione metabolism in renal oncocytoma
2018
Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters
2013
A systematic dissection of determinants and consequences of snoRNA-guided pseudouridylation of human mRNA
2022 StandoutNobel
Mechanisms and Consequences of Cancer Genome Instability: Lessons from Genome Sequencing Studies
2016
Safely targeting cancer stem cells via selective catenin coactivator antagonism
2014
Modeling and Targeting MYC Genes in Childhood Brain Tumors
2017
Unusual Neoplasms Detected in Testis Cancer Patients Undergoing Post-Chemotherapy Retroperitoneal Lymphadenectomy
1994
Agreement in Computer-Assisted Manual Scoring of Polysomnograms across Sleep Centers
2013
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
MindTheGap: integrated detection and assembly of short and long insertions
2014
Works of Chip Stewart being referenced
RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues
2019 Science
Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression
2013
Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
2012
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
2014
SvABA: genome-wide detection of structural variants and indels by local assembly
2018
Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing
2014
A remarkably simple genome underlies highly malignant pediatric rhabdoid cancers
2012
A Comprehensive Map of Mobile Element Insertion Polymorphisms in Humans
2011
Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation
2013
Postirradiation Sarcoma
2008
Interobserver Agreement Among Sleep Scorers From Different Centers in a Large Dataset
2000