Standout Papers
Citation Impact
Citing Papers
Nature of the protein universe
2009 StandoutNobel
Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
2014 StandoutNobel
Navigating the protein fitness landscape with Gaussian processes
2012 StandoutNobel
The Genetic Basis for Bacterial Mercury Methylation
2013 StandoutScience
Principles for designing proteins with cavities formed by curved β sheets
2017 StandoutScienceNobel
Consistent blind protein structure generation from NMR chemical shift data
2008 StandoutNobel
Protein homology model refinement by large-scale energy optimization
2018 StandoutNobel
Exploiting conformational dynamics to modulate the function of designed proteins
2023 StandoutNobel
Improved protein structure prediction using predicted interresidue orientations
2020 StandoutNobel
De novo design of transmembrane β barrels
2021 StandoutScienceNobel
Predictive energy landscapes for folding α-helical transmembrane proteins
2014
Computational design of closely related proteins that adopt two well-defined but structurally divergent folds
2020 StandoutNobel
Simultaneous prediction of protein folding and docking at high resolution
2009 StandoutNobel
Physically realistic homology models built with rosetta can be more accurate than their templates
2006 StandoutNobel
De novo design of a transmembrane Zn 2+ -transporting four-helix bundle
2014 Science
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
Accurate computational design of multipass transmembrane proteins
2018 StandoutScienceNobel
The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components
2005 StandoutNobel
Protein structure determination from NMR chemical shifts
2007
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
Mutational scanning reveals the determinants of protein insertion and association energetics in the plasma membrane
2016
Statistically derived asymmetric membrane potentials from α-helical and β-barrel membrane proteins
2018
Dynamic personalities of proteins
2007 StandoutNature
Translation initiation in Leishmania major: characterisation of multiple eIF4F subunit homologues
2004
An accurate, residue‐level, pair potential of mean force for folding and binding based on the distance‐scaled, ideal‐gas reference state
2004
An Atomic Environment Potential for use in Protein Structure Prediction
2005 StandoutNobel
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
2013 StandoutNatureNobel
Automated server predictions in CASP7
2007
Dynamic imine chemistry
2012 StandoutNobel
Statistical potential for assessment and prediction of protein structures
2006 Standout
Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model
2010
Membrane protein orientation and refinement using a knowledge-based statistical potential
2013
Switching through Coordination‐Coupled Proton Transfer
2011
Dynamical features of thePlasmodium falciparumribosome during translation
2015 StandoutNobel
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
The coming of age of de novo protein design
2016 StandoutNatureNobel
Solution structure of a minor and transiently formed state of a T4 lysozyme mutant
2011 StandoutNatureNobel
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
2007
De novo design of bioactive protein switches
2019 StandoutNatureNobel
Improving the performance of rosetta using multiple sequence alignment information and global measures of hydrophobic core formation
2001 StandoutNobel
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Consistent refinement of submitted models at CASP using a knowledge‐based potential
2010 StandoutNobel
KoBaMIN: a knowledge-based minimization web server for protein structure refinement
2012 StandoutNobel
Generalized Fluctuation-Dissipation Relation and Effective Temperature Upon Heating a Deeply Supercooled Liquid
2013 StandoutNobel
Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane
2020
Structure of the Mammalian Ribosomal 43S Preinitiation Complex Bound to the Scanning Factor DHX29
2013 StandoutNobel
A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations
2018 StandoutNobel
How Homologs Can Help to Predict Protein Folds Even Though They Cannot Be Predicted for Individual Sequences
1998
Near-native structure refinement using in vacuo energy minimization
2007 StandoutNobel
Ab Initio Protein Structure Prediction: Progress and Prospects
2001 StandoutNobel
Pore-forming activity and structural autoinhibition of the gasdermin family
2016 StandoutNature
Unimpeded Permeation of Water Through Helium-Leak–Tight Graphene-Based Membranes
2012 StandoutScienceNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
Funnel sculpting for in silico assembly of secondary structure elements of proteins
2003 StandoutNobel
Roles of mutation and recombination in the evolution of protein thermodynamics
2002 StandoutNobel
Improved recognition of native-like protein structures using a family of designed sequences
2002 StandoutNobel
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Molecular Dynamics: Survey of Methods for Simulating the Activity of Proteins
2006
Evolutionary-scale prediction of atomic-level protein structure with a language model
2023 StandoutScience
Computational protein structure refinement: almost there, yet still so far to go
2017
Averaging interaction energies over homologs improves protein fold recognition in gapless threading
1999
Design of self-assembling transmembrane helical bundles to elucidate principles required for membrane protein folding and ion transport
2017
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
General purpose molecular dynamics simulations fully implemented on graphics processing units
2008 Standout
Molecular dynamics simulation of nanoscale liquid flows
2010
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
2016 StandoutNobel
Protein Design with Deep Learning
2021
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12
2017
Comparative ribosome profiling reveals extensive translational complexity in differentTrypanosoma bruceilife cycle stages
2014
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Nonnative Interactions in the FF Domain Folding Pathway from an Atomic Resolution Structure of a Sparsely Populated Intermediate: An NMR Relaxation Dispersion Study
2011 StandoutNobel
Works of Chen Keasar being referenced
Mimetic Neural Networks: A Unified Framework for Protein Design and Folding
2022
Methods for estimation of model accuracy in CASP12
2017
Identification of the Zn2+ Binding Site and Mode of Operation of a Mammalian Zn2+ Transporter
2009
A Novel Approach to Decoy Set Generation: Designing a Physical Energy Function Having Local Minima with Native Structure Characteristics
2003 StandoutNobel
Differentiable, multi‐dimensional, knowledge‐based energy terms for torsion angle probabilities and propensities
2008
MESHI: a new library of Java classes for molecular modeling
2005
Knowledge-Based Potential for Positioning Membrane-Associated Structures and Assessing Residue-Specific Energetic Contributions
2012
Simultaneous and coupled energy optimization of homologous proteins: a new tool for structure prediction
1997
Cap-binding activity of an eIF4E homolog from Leishmania
2004
A Novel Algorithm for Non-Bonded-List Updating in Molecular Simulations
2006
Homology as a Tool in Optimization Problems: Structure Determination of 2D Heteropolymers
1995
Coupling the folding of homologous proteins
1998