Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
2009 Standout
Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome
2018
Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes
2010 StandoutScience
Transposition-Driven Genomic Heterogeneity in the Drosophila Brain
2013 StandoutScienceNobel
Apollo: a sequence annotation editor
2002
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
2011 Standout
Systematic determination of patterns of gene expression during Drosophila embryogenesis
2002
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
2011 Standout
Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function
2010 StandoutNobel
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
Peptides Encoded by Short ORFs Control Development and Define a New Eukaryotic Gene Family
2007
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Control of somatic tissue differentiation by the long non-coding RNA TINCR
2012 StandoutNature
ESC, ESCL and their roles in Polycomb Group mechanisms
2008
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
2015 Standout
A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response
2010 Standout
Tbx20-related genes, mid and H15, are required for tinman expression, proper patterning, and normal differentiation of cardioblasts in Drosophila
2005
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
2009 StandoutNature
A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
2008 Standout
Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes
2008
Pattern Recognition Receptors and Inflammation
2010 Standout
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
2007 Standout
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
2002
The Histone Chaperone Spt6 Is Required for Activation-induced Cytidine Deaminase Target Determination through H3K4me3 Regulation
2012 StandoutNobel
Targeted RNA sequencing reveals the deep complexity of the human transcriptome
2011
Global Analysis of mRNA Localization Reveals a Prominent Role in Organizing Cellular Architecture and Function
2007
Metazoan MicroRNAs
2018 Standout
Glial Lipid Droplets and ROS Induced by Mitochondrial Defects Promote Neurodegeneration
2015
A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila
2007 StandoutNature
Wnt/β-Catenin Signaling and Disease
2012 Standout
Intrinsic Immunity Shapes Viral Resistance of Stem Cells
2017 StandoutNobel
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
2010 Standout
FlyBase at 25: looking to the future
2016
Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain
2020 StandoutNobel
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
Secretion of Wnt Ligands Requires Evi, a Conserved Transmembrane Protein
2006
Intergenic and Repeat Transcription in Human, Chimpanzee and Macaque Brains Measured by RNA-Seq
2010 StandoutNobel
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Computational analysis of core promoters in the Drosophila genome
2002
Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element
2011
Braveheart, a Long Noncoding RNA Required for Cardiovascular Lineage Commitment
2013
Wnt/β-Catenin Signaling in Development and Disease
2006 Standout
An integrated computational pipeline and database to support whole-genome sequence annotation
2002 StandoutNobel
Mesodermally expressed Drosophila microRNA-1 is regulated by Twist and is required in muscles during larval growth
2005 StandoutNobel
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
2011
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
2007
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
2015
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
2010 StandoutNature
Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
2016
Evolution and Functions of Long Noncoding RNAs
2009 Standout
Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
2010
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
2010 StandoutNature
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes
2007
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
2004
A complete bacterial genome assembled de novo using only nanopore sequencing data
2015
Long Noncoding RNAs: Cellular Address Codes in Development and Disease
2013 Standout
Spatial partitioning of the regulatory landscape of the X-inactivation centre
2012 StandoutNature
Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities
2017 Standout
The Polycomb complex PRC2 and its mark in life
2011 StandoutNature
Genome Regulation by Long Noncoding RNAs
2012 Standout
Gene Regulatory Networks and the Evolution of Animal Body Plans
2006 StandoutScience
Distinguishing protein-coding and noncoding genes in the human genome
2007
Microfluidic Devices Integrating Microcavity Surface-Plasmon-Resonance Sensors: Glucose Oxidase Binding-Activity Detection
2009
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
2011
Dual-Label STED Nanoscopy of Living Cells Using Photochromism
2011 StandoutNobel
Interferon-Stimulated Genes: A Complex Web of Host Defenses
2014 StandoutNobel
Plasmons in Strongly Coupled Metallic Nanostructures
2011 Standout
Cryo-EM structure of the mammalian eukaryotic release factor eRF1–eRF3-associated termination complex
2012 StandoutNobel
Imaging the glycome
2008 StandoutNobel
Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster
2005
Works of Charles Yu being referenced
Revisiting the protein-coding gene catalog ofDrosophila melanogasterusing 12 fly genomes
2007
The Drosophila Gene Collection: Identification of Putative Full-Length cDNAs for 70% of D. melanogaster Genes
2002
Long-read, whole-genome shotgun sequence data for five model organisms
2014
A Drosophilafull-length cDNA resource
2002
Genome-wide analysis of promoter architecture in Drosophila melanogaster
2010