Citation Impact
Citing Papers
Prokka: rapid prokaryotic genome annotation
2014 Standout
Structure prediction using sparse simulated NOE restraints with Rosetta in CASP 11
2016 StandoutNobel
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
An Efficient Explanation of Individual Classifications using Game Theory
2010
Protein subcellular localization prediction based on compartment-specific features and structure conservation
2007
An SVM-based system for predicting protein subnuclear localizations
2005
LocateP: Genome-scale subcellular-location predictor for bacterial proteins
2008
Explaining prediction models and individual predictions with feature contributions
2013 Standout
Unraveling the meaning of chemical shifts in protein NMR
2017
Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set
2011 StandoutNobel
Resolution‐adapted recombination of structural features significantly improves sampling in restraint‐guided structure calculation
2011 StandoutNobel
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
Using NMR Chemical Shifts as Structural Restraints in Molecular Dynamics Simulations of Proteins
2010
Prediction of protein subcellular localization
2006
A PGC1-α-dependent myokine that drives brown-fat-like development of white fat and thermogenesis
2012 StandoutNature
Mimicking Cellular Sorting Improves Prediction of Subcellular Localization
2005
Incorporation of evolutionary information into Rosetta comparative modeling
2011 StandoutNobel
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
2011 Standout
A protocol for generating a high-quality genome-scale metabolic reconstruction
2010
A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
2008 Standout
The automatic annotation of bacterial genomes
2012
PSLDoc: Protein subcellular localization prediction based on gapped‐dipeptides and probabilistic latent semantic analysis
2008
PSORTdb: a protein subcellular localization database for bacteria
2004
High-Resolution Comparative Modeling with RosettaCM
2013 StandoutNobel
Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
2012 StandoutNobel
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
2007 Standout
Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
2008
Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers
2012 StandoutNobel
Identification of Contractile Vacuole Proteins in Trypanosoma cruzi
2011
Stop explaining black box machine learning models for high stakes decisions and use interpretable models instead
2019 Standout
Locating proteins in the cell using TargetP, SignalP and related tools
2007 Standout
Mitochondria: In Sickness and in Health
2012 Standout
WoLF PSORT: protein localization predictor
2007 Standout
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
2010
A survey on deep learning in medical image analysis
2017 Standout
Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling
2006
The FoldX web server: an online force field
2005 Standout
Comparative Population Genomics of the Ejaculate in Humans and the Great Apes
2013 StandoutNobel
Sialic Acid Glycobiology Unveils Trypanosoma cruzi Trypomastigote Membrane Physiology
2016 StandoutNobel
Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria
2005
Deep learning and process understanding for data-driven Earth system science
2019 StandoutNature
Intrinsic disorder drives N-terminal ubiquitination by Ube2w
2014 StandoutNobel
Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping
2010 StandoutNobel
From local explanations to global understanding with explainable AI for trees
2020 Standout
Methods for predicting bacterial protein subcellular localization
2006
Comparison of Protein and mRNA Expression Evolution in Humans and Chimpanzees
2007 StandoutNobel
The tegument surface membranes of the human blood parasite Schistosoma mansoni: A proteomic analysis after differential extraction
2006
De novo design of a non-local β-sheet protein with high stability and accuracy
2018 StandoutNobel
Mapping Yeast N-Glycosites with Isotopically Recoded Glycans
2012 StandoutNobel
Leptospira: the dawn of the molecular genetics era for an emerging zoonotic pathogen
2009 Standout
What is flux balance analysis?
2010 Standout
LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST
2005
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs
2004
Evaluation and comparison of mammalian subcellular localization prediction methods
2006
Helminth infections: the great neglected tropical diseases
2008 Standout
Protein Structure Determination from Pseudocontact Shifts Using ROSETTA
2012 StandoutNobel
Predicting Subcellular Localization via Protein Motif Co-Occurrence
2004
Chapter 2 Predicting Proteomes of Mitochondria and Related Organelles from Genomic and Expressed Sequence Tag Data
2009
De novo protein structure determination from near-atomic-resolution cryo-EM maps
2015 StandoutNobel
A Membrane Burial Potential with H-Bonds and Applications to Curved Membranes and Fast Simulations
2018 StandoutNobel
MoleculeNet: a benchmark for molecular machine learning
2017 Standout
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
2010 Standout
Explainable Artificial Intelligence (XAI): Concepts, taxonomies, opportunities and challenges toward responsible AI
2019 Standout
One contact for every twelve residues allows robust and accurate topology‐level protein structure modeling
2013 StandoutNobel
Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures
2014 StandoutNobel
Trends and Trajectories for Explainable, Accountable and Intelligible Systems
2018
Comprehensible classification models
2014
Explaining Classifications For Individual Instances
2008
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Computational modeling of membrane proteins
2014
PLUMED 2: New feathers for an old bird
2013 Standout
Influence Relevance Voting: An Accurate And Interpretable Virtual High Throughput Screening Method
2009
Explaining nonlinear classification decisions with deep Taylor decomposition
2016
Protein folding, structure prediction and design
2014 StandoutNobel
Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings
2011 StandoutNobel
Methods for interpreting and understanding deep neural networks
2017 Standout
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
2012 StandoutNobel
Peeking Inside the Black-Box: A Survey on Explainable Artificial Intelligence (XAI)
2018 Standout
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
2004
Works of Cam Macdonell being referenced
Visual explanation of evidence in additive classifiers
2006
Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations
2004
GeNMR: a web server for rapid NMR-based protein structure determination
2009
Predicting subcellular localization of proteins using machine-learned classifiers
2004